Literature DB >> 24505808

A probabilistic, non-parametric framework for inter-modality label fusion.

Juan Eugenio Iglesias1, Mert Rory Sabuncu1, Koen Van Leemput1.   

Abstract

Multi-atlas techniques are commonplace in medical image segmentation due to their high performance and ease of implementation. Locally weighting the contributions from the different atlases in the label fusion process can improve the quality of the segmentation. However, how to define these weights in a principled way in inter-modality scenarios remains an open problem. Here we propose a label fusion scheme that does not require voxel intensity consistency between the atlases and the target image to segment. The method is based on a generative model of image data in which each intensity in the atlases has an associated conditional distribution of corresponding intensities in the target. The segmentation is computed using variational expectation maximization (VEM) in a Bayesian framework. The method was evaluated with a dataset of eight proton density weighted brain MRI scans with nine labeled structures of interest. The results show that the algorithm outperforms majority voting and a recently published inter-modality label fusion algorithm.

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Mesh:

Year:  2013        PMID: 24505808      PMCID: PMC3974705          DOI: 10.1007/978-3-642-40760-4_72

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  11 in total

1.  Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain.

Authors:  Bruce Fischl; David H Salat; Evelina Busa; Marilyn Albert; Megan Dieterich; Christian Haselgrove; Andre van der Kouwe; Ron Killiany; David Kennedy; Shuna Klaveness; Albert Montillo; Nikos Makris; Bruce Rosen; Anders M Dale
Journal:  Neuron       Date:  2002-01-31       Impact factor: 17.173

Review 2.  Magnetic resonance technology in human brain science: blueprint for a program based upon morphometry.

Authors:  V S Caviness; P A Filipek; D N Kennedy
Journal:  Brain Dev       Date:  1989       Impact factor: 1.961

3.  Multi-atlas-based segmentation with local decision fusion--application to cardiac and aortic segmentation in CT scans.

Authors:  Ivana Isgum; Marius Staring; Annemarieke Rutten; Mathias Prokop; Max A Viergever; Bram van Ginneken
Journal:  IEEE Trans Med Imaging       Date:  2009-01-06       Impact factor: 10.048

4.  elastix: a toolbox for intensity-based medical image registration.

Authors:  Stefan Klein; Marius Staring; Keelin Murphy; Max A Viergever; Josien P W Pluim
Journal:  IEEE Trans Med Imaging       Date:  2009-11-17       Impact factor: 10.048

5.  Multimodality image registration by maximization of mutual information.

Authors:  F Maes; A Collignon; D Vandermeulen; G Marchal; P Suetens
Journal:  IEEE Trans Med Imaging       Date:  1997-04       Impact factor: 10.048

6.  A Generative Model for Probabilistic Label Fusion of Multimodal Data.

Authors:  Juan Eugenio Iglesias; Mert Rory Sabuncu; Koen Van Leemput
Journal:  Multimodal Brain Image Anal (2012)       Date:  2012

7.  Logarithm odds maps for shape representation.

Authors:  Kilian M Pohl; John Fisher; Martha Shenton; Robert W McCarley; W Eric L Grimson; Ron Kikinis; William M Wells
Journal:  Med Image Comput Comput Assist Interv       Date:  2006

8.  Nearly automatic segmentation of hippocampal subfields in in vivo focal T2-weighted MRI.

Authors:  Paul A Yushkevich; Hongzhi Wang; John Pluta; Sandhitsu R Das; Caryne Craige; Brian B Avants; Michael W Weiner; Susanne Mueller
Journal:  Neuroimage       Date:  2010-06-30       Impact factor: 6.556

9.  A GENERATIVE MODEL FOR MULTI-ATLAS SEGMENTATION ACROSS MODALITIES.

Authors:  Juan Eugenio Iglesias; Mert Rory Sabuncu; Koen Van Leemput
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2012

10.  Automatic anatomical brain MRI segmentation combining label propagation and decision fusion.

Authors:  Rolf A Heckemann; Joseph V Hajnal; Paul Aljabar; Daniel Rueckert; Alexander Hammers
Journal:  Neuroimage       Date:  2006-07-24       Impact factor: 6.556

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  1 in total

Review 1.  Multi-atlas segmentation of biomedical images: A survey.

Authors:  Juan Eugenio Iglesias; Mert R Sabuncu
Journal:  Med Image Anal       Date:  2015-07-06       Impact factor: 8.545

  1 in total

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