Literature DB >> 25679909

Multiscale polar theory of microtubule and motor-protein assemblies.

Tong Gao1, Robert Blackwell2, Matthew A Glaser2, M D Betterton2, Michael J Shelley1.   

Abstract

Microtubules and motor proteins are building blocks of self-organized subcellular biological structures such as the mitotic spindle and the centrosomal microtubule array. These same ingredients can form new "bioactive" liquid-crystalline fluids that are intrinsically out of equilibrium and which display complex flows and defect dynamics. It is not yet well understood how microscopic activity, which involves polarity-dependent interactions between motor proteins and microtubules, yields such larger-scale dynamical structures. In our multiscale theory, Brownian dynamics simulations of polar microtubule ensembles driven by cross-linking motors allow us to study microscopic organization and stresses. Polarity sorting and cross-link relaxation emerge as two polar-specific sources of active destabilizing stress. On larger length scales, our continuum Doi-Onsager theory captures the hydrodynamic flows generated by polarity-dependent active stresses. The results connect local polar structure to flow structures and defect dynamics.

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Year:  2015        PMID: 25679909      PMCID: PMC4425281          DOI: 10.1103/PhysRevLett.114.048101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  26 in total

1.  Single kinesin molecules studied with a molecular force clamp.

Authors:  K Visscher; M J Schnitzer; S M Block
Journal:  Nature       Date:  1999-07-08       Impact factor: 49.962

2.  Physical properties determining self-organization of motors and microtubules.

Authors:  T Surrey; F Nedelec; S Leibler; E Karsenti
Journal:  Science       Date:  2001-05-11       Impact factor: 47.728

3.  Stability of active suspensions.

Authors:  Christel Hohenegger; Michael J Shelley
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-04-20

4.  Lennard-Jones sticks: a new model for linear molecules.

Authors:  Franz J Vesely
Journal:  J Chem Phys       Date:  2006-12-07       Impact factor: 3.488

5.  Defect annihilation and proliferation in active nematics.

Authors:  Luca Giomi; Mark J Bowick; Xu Ma; M Cristina Marchetti
Journal:  Phys Rev Lett       Date:  2013-05-29       Impact factor: 9.161

6.  Velocity correlations in an active nematic.

Authors:  Sumesh P Thampi; Ramin Golestanian; Julia M Yeomans
Journal:  Phys Rev Lett       Date:  2013-09-10       Impact factor: 9.161

7.  Nonlinear dynamics and rheology of active fluids: simulations in two dimensions.

Authors:  S M Fielding; D Marenduzzo; M E Cates
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-04-13

8.  Meso-scale turbulence in living fluids.

Authors:  Henricus H Wensink; Jörn Dunkel; Sebastian Heidenreich; Knut Drescher; Raymond E Goldstein; Hartmut Löwen; Julia M Yeomans
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

9.  Living liquid crystals.

Authors:  Shuang Zhou; Andrey Sokolov; Oleg D Lavrentovich; Igor S Aranson
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-13       Impact factor: 11.205

10.  Nonequilibrium structure and dynamics in a microscopic model of thin-film active gels.

Authors:  D A Head; W J Briels; Gerhard Gompper
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-03-10
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  31 in total

1.  Shape control and compartmentalization in active colloidal cells.

Authors:  Matthew Spellings; Michael Engel; Daphne Klotsa; Syeda Sabrina; Aaron M Drews; Nguyen H P Nguyen; Kyle J M Bishop; Sharon C Glotzer
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-07       Impact factor: 11.205

2.  Self-straining of actively crosslinked microtubule networks.

Authors:  Sebastian Fürthauer; Bezia Lemma; Peter J Foster; Stephanie C Ems-McClung; Che-Hang Yu; Claire E Walczak; Zvonimir Dogic; Daniel J Needleman; Michael J Shelley
Journal:  Nat Phys       Date:  2019-09-02       Impact factor: 20.034

3.  Geometric Asymmetry Induces Upper Limit of Mitotic Spindle Size.

Authors:  Jingchen Li; Hongyuan Jiang
Journal:  Biophys J       Date:  2017-04-11       Impact factor: 4.033

4.  Generalized Swift-Hohenberg models for dense active suspensions.

Authors:  Anand U Oza; Sebastian Heidenreich; Jörn Dunkel
Journal:  Eur Phys J E Soft Matter       Date:  2016-10-25       Impact factor: 1.890

5.  Extensile motor activity drives coherent motions in a model of interphase chromatin.

Authors:  David Saintillan; Michael J Shelley; Alexandra Zidovska
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-22       Impact factor: 11.205

6.  Data-driven quantitative modeling of bacterial active nematics.

Authors:  He Li; Xia-Qing Shi; Mingji Huang; Xiao Chen; Minfeng Xiao; Chenli Liu; Hugues Chaté; H P Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-28       Impact factor: 11.205

7.  Statistical properties of autonomous flows in 2D active nematics.

Authors:  Linnea M Lemma; Stephen J DeCamp; Zhihong You; Luca Giomi; Zvonimir Dogic
Journal:  Soft Matter       Date:  2019-04-10       Impact factor: 3.679

8.  Contributions of Microtubule Dynamic Instability and Rotational Diffusion to Kinetochore Capture.

Authors:  Robert Blackwell; Oliver Sweezy-Schindler; Christopher Edelmaier; Zachary R Gergely; Patrick J Flynn; Salvador Montes; Ammon Crapo; Alireza Doostan; J Richard McIntosh; Matthew A Glaser; Meredith D Betterton
Journal:  Biophys J       Date:  2016-09-28       Impact factor: 4.033

9.  Orientational order of motile defects in active nematics.

Authors:  Stephen J DeCamp; Gabriel S Redner; Aparna Baskaran; Michael F Hagan; Zvonimir Dogic
Journal:  Nat Mater       Date:  2015-08-17       Impact factor: 43.841

10.  Filament rigidity and connectivity tune the deformation modes of active biopolymer networks.

Authors:  Samantha Stam; Simon L Freedman; Shiladitya Banerjee; Kimberly L Weirich; Aaron R Dinner; Margaret L Gardel
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-07       Impact factor: 11.205

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