Literature DB >> 25676190

Using modern tools to probe the structure-function relationship of fatty acid synthases.

Kara Finzel1, D John Lee1, Michael D Burkart1.   

Abstract

Fatty acid biosynthesis is essential to life and represents one of the most conserved pathways in nature, preserving the same handful of chemical reactions across all species. Recent interest in the molecular details of the de novo fatty acid synthase (FAS) has been heightened by demand for renewable fuels and the emergence of multidrug-resistant bacterial strains. Central to FAS is the acyl carrier protein (ACP), a protein chaperone that shuttles the growing acyl chain between catalytic enzymes within the FAS. Human efforts to alter fatty acid biosynthesis for oil production, chemical feedstock, or antimicrobial purposes has been met with limited success, due in part to a lack of detailed molecular information behind the ACP-partner protein interactions inherent to the pathway. This review will focus on recently developed tools for the modification of ACP and analysis of protein-protein interactions, such as mechanism-based crosslinking, and the studies exploiting them. Discussion specific to each enzymatic domain will focus first on mechanism and known inhibitors, followed by available structures and known interactions with ACP. Although significant unknowns remain, new understandings of the intricacies of FAS point to future advances in manipulating this complex molecular factory.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  acyl carrier protein; biosynthesis; crosslinkers; fatty acids; inhibitors

Mesh:

Substances:

Year:  2015        PMID: 25676190      PMCID: PMC4545599          DOI: 10.1002/cbic.201402578

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  178 in total

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Authors:  C W Levy; A Roujeinikova; S Sedelnikova; P J Baker; A R Stuitje; A R Slabas; D W Rice; J B Rafferty
Journal:  Nature       Date:  1999-04-01       Impact factor: 49.962

2.  Analysis of amino acid motifs diagnostic for the sn-glycerol-3-phosphate acyltransferase reaction.

Authors:  T M Lewin; P Wang; R A Coleman
Journal:  Biochemistry       Date:  1999-05-04       Impact factor: 3.162

3.  Structure of the complex between the antibiotic cerulenin and its target, beta-ketoacyl-acyl carrier protein synthase.

Authors:  M Moche; G Schneider; P Edwards; K Dehesh; Y Lindqvist
Journal:  J Biol Chem       Date:  1999-03-05       Impact factor: 5.157

4.  Molecular basis for triclosan activity involves a flipping loop in the active site.

Authors:  X Qiu; C A Janson; R I Court; M G Smyth; D J Payne; S S Abdel-Meguid
Journal:  Protein Sci       Date:  1999-11       Impact factor: 6.725

5.  Holo-(acyl carrier protein) synthase and phosphopantetheinyl transfer in Escherichia coli.

Authors:  R S Flugel; Y Hwangbo; R H Lambalot; J E Cronan; C T Walsh
Journal:  J Biol Chem       Date:  2000-01-14       Impact factor: 5.157

6.  Thiolactomycin and related analogues as novel anti-mycobacterial agents targeting KasA and KasB condensing enzymes in Mycobacterium tuberculosis.

Authors:  L Kremer; J D Douglas; A R Baulard; C Morehouse; M R Guy; D Alland; L G Dover; J H Lakey; W R Jacobs; P J Brennan; D E Minnikin; G S Besra
Journal:  J Biol Chem       Date:  2000-06-02       Impact factor: 5.157

7.  The X-ray structure of Brassica napus beta-keto acyl carrier protein reductase and its implications for substrate binding and catalysis.

Authors:  M Fisher; J T Kroon; W Martindale; A R Stuitje; A R Slabas; J B Rafferty
Journal:  Structure       Date:  2000-04-15       Impact factor: 5.006

8.  Crystal structure of the Mycobacterium tuberculosis enoyl-ACP reductase, InhA, in complex with NAD+ and a C16 fatty acyl substrate.

Authors:  D A Rozwarski; C Vilchèze; M Sugantino; R Bittman; J C Sacchettini
Journal:  J Biol Chem       Date:  1999-05-28       Impact factor: 5.157

9.  Mechanism of triclosan inhibition of bacterial fatty acid synthesis.

Authors:  R J Heath; J R Rubin; D R Holland; E Zhang; M E Snow; C O Rock
Journal:  J Biol Chem       Date:  1999-04-16       Impact factor: 5.157

10.  The 1.8 A crystal structure and active-site architecture of beta-ketoacyl-acyl carrier protein synthase III (FabH) from escherichia coli.

Authors:  C Davies; R J Heath; S W White; C O Rock
Journal:  Structure       Date:  2000-02-15       Impact factor: 5.006

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  25 in total

1.  Structure-based analysis of the molecular interactions between acyltransferase and acyl carrier protein in vicenistatin biosynthesis.

Authors:  Akimasa Miyanaga; Shohei Iwasawa; Yuji Shinohara; Fumitaka Kudo; Tadashi Eguchi
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-01       Impact factor: 11.205

Review 2.  Spatial Organization of Metabolic Enzyme Complexes in Cells.

Authors:  Danielle L Schmitt; Songon An
Journal:  Biochemistry       Date:  2017-06-16       Impact factor: 3.162

3.  Acyl Carrier Protein Cyanylation Delivers a Ketoacyl Synthase-Carrier Protein Cross-Link.

Authors:  Grace A R Thiele; Connie P Friedman; Kathleen J S Tsai; Joris Beld; Casey H Londergan; Louise K Charkoudian
Journal:  Biochemistry       Date:  2017-05-08       Impact factor: 3.162

4.  Molecular basis for interactions between an acyl carrier protein and a ketosynthase.

Authors:  Jacob C Milligan; D John Lee; David R Jackson; Andrew J Schaub; Joris Beld; Jesus F Barajas; Joseph J Hale; Ray Luo; Michael D Burkart; Shiou-Chuan Tsai
Journal:  Nat Chem Biol       Date:  2019-06-17       Impact factor: 15.040

5.  Utilizing Mechanistic Cross-Linking Technology to Study Protein-Protein Interactions: An Experiment Designed for an Undergraduate Biochemistry Lab.

Authors:  Kara Finzel; Joris Beld; Michael D Burkart; Louise K Charkoudian
Journal:  J Chem Educ       Date:  2017-02-03       Impact factor: 2.979

6.  Modifying the Thioester Linkage Affects the Structure of the Acyl Carrier Protein.

Authors:  Terra Sztain; Ashay Patel; D John Lee; Tony D Davis; J Andrew McCammon; Michael D Burkart
Journal:  Angew Chem Int Ed Engl       Date:  2019-07-02       Impact factor: 15.336

7.  Structural analysis of the dual-function thioesterase SAV606 unravels the mechanism of Michael addition of glycine to an α,β-unsaturated thioester.

Authors:  Taichi Chisuga; Akimasa Miyanaga; Fumitaka Kudo; Tadashi Eguchi
Journal:  J Biol Chem       Date:  2017-05-18       Impact factor: 5.157

Review 8.  Heterologous production of resveratrol in bacterial hosts: current status and perspectives.

Authors:  A Braga; P Ferreira; J Oliveira; I Rocha; N Faria
Journal:  World J Microbiol Biotechnol       Date:  2018-07-27       Impact factor: 3.312

9.  Interfacial plasticity facilitates high reaction rate of E. coli FAS malonyl-CoA:ACP transacylase, FabD.

Authors:  Laetitia E Misson; Jeffrey T Mindrebo; Tony D Davis; Ashay Patel; J Andrew McCammon; Joseph P Noel; Michael D Burkart
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-14       Impact factor: 11.205

10.  Trapping of the Enoyl-Acyl Carrier Protein Reductase-Acyl Carrier Protein Interaction.

Authors:  Lorillee Tallorin; Kara Finzel; Quynh G Nguyen; Joris Beld; James J La Clair; Michael D Burkart
Journal:  J Am Chem Soc       Date:  2016-03-15       Impact factor: 15.419

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