Literature DB >> 25664544

Mapping native disulfide bonds at a proteome scale.

Shan Lu1, Sheng-Bo Fan2, Bing Yang3, Yu-Xin Li3, Jia-Ming Meng2, Long Wu2, Pin Li4, Kun Zhang2, Mei-Jun Zhang3, Yan Fu5, Jincai Luo4, Rui-Xiang Sun6, Si-Min He6, Meng-Qiu Dong1.   

Abstract

We developed a high-throughput mass spectrometry method, pLink-SS (http://pfind.ict.ac.cn/software/pLink/2014/pLink-SS.html), for precise identification of disulfide-linked peptides. Using pLink-SS, we mapped all native disulfide bonds of a monoclonal antibody and ten standard proteins. We performed disulfide proteome analyses and identified 199 disulfide bonds in Escherichia coli and 568 in proteins secreted by human endothelial cells. We discovered many regulatory disulfide bonds involving catalytic or metal-binding cysteine residues.

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Year:  2015        PMID： 25664544     DOI： 10.1038/nmeth.3283

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  32 in total

1.  Crystal structure of the quorum-sensing protein LuxS reveals a catalytic metal site.

Authors:  M T Hilgers; M L Ludwig
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-11       Impact factor: 11.205

2.  StavroX--a software for analyzing crosslinked products in protein interaction studies.

Authors:  Michael Götze; Jens Pettelkau; Sabine Schaks; Konstanze Bosse; Christian H Ihling; Fabian Krauth; Romy Fritzsche; Uwe Kühn; Andrea Sinz
Journal:  J Am Soc Mass Spectrom       Date:  2011-10-25       Impact factor: 3.109

Review 3.  Ubiquitin-like proteins.

Authors:  Annemarthe G van der Veen; Hidde L Ploegh
Journal:  Annu Rev Biochem       Date:  2012-03-09       Impact factor: 23.643

Review 4.  How proteins form disulfide bonds.

Authors:  Matthieu Depuydt; Joris Messens; Jean-Francois Collet
Journal:  Antioxid Redox Signal       Date:  2011-03-31       Impact factor: 8.401

5.  The release of enzymes by osmotic shock from Escherichia coli in exponential phase.

Authors:  N G Nossal; L A Heppel
Journal:  J Biol Chem       Date:  1966-07-10       Impact factor: 5.157

6.  Identification and characterization of disulfide bonds in proteins and peptides from tandem MS data by use of the MassMatrix MS/MS search engine.

Authors:  Hua Xu; Liwen Zhang; Michael A Freitas
Journal:  J Proteome Res       Date:  2007-12-12       Impact factor: 4.466

7.  The disulphide isomerase DsbC cooperates with the oxidase DsbA in a DsbD-independent manner.

Authors:  Didier Vertommen; Matthieu Depuydt; Jonathan Pan; Pauline Leverrier; Laurent Knoops; Jean-Pierre Szikora; Joris Messens; James C A Bardwell; Jean-Francois Collet
Journal:  Mol Microbiol       Date:  2007-11-25       Impact factor: 3.501

8.  Mass spectrometric determination of disulfide linkages in recombinant therapeutic proteins using online LC-MS with electron-transfer dissociation.

Authors:  Shiaw-Lin Wu; Haitao Jiang; Qiaozhen Lu; Shujia Dai; William S Hancock; Barry L Karger
Journal:  Anal Chem       Date:  2009-01-01       Impact factor: 6.986

Review 9.  Post-translational control of protein function by disulfide bond cleavage.

Authors:  Kristina M Cook; Philip J Hogg
Journal:  Antioxid Redox Signal       Date:  2013-02-15       Impact factor: 8.401

10.  Cytoscape 2.8: new features for data integration and network visualization.

Authors:  Michael E Smoot; Keiichiro Ono; Johannes Ruscheinski; Peng-Liang Wang; Trey Ideker
Journal:  Bioinformatics       Date:  2010-12-12       Impact factor: 6.937
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  38 in total

1.  A receptor heteromer mediates the male perception of female attractants in plants.

Authors:  Tong Wang; Liang Liang; Yong Xue; Peng-Fei Jia; Wei Chen; Meng-Xia Zhang; Ying-Chun Wang; Hong-Ju Li; Wei-Cai Yang
Journal:  Nature       Date:  2016-02-10       Impact factor: 49.962

2.  Experimental Assignment of Disulfide-Bonds in Purified Proteins.

Authors:  Hsin-Yao Tang; David W Speicher
Journal:  Curr Protoc Protein Sci       Date:  2019-02-12

3.  FGF23 contains two distinct high-affinity binding sites enabling bivalent interactions with α-Klotho.

Authors:  Yoshihisa Suzuki; Ekaterina Kuzina; Seong J An; Francisco Tome; Jyotidarsini Mohanty; Wenxue Li; Sangwon Lee; Yansheng Liu; Irit Lax; Joseph Schlessinger
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-30       Impact factor: 11.205

4.  The SAMHD1 dNTP Triphosphohydrolase Is Controlled by a Redox Switch.

Authors:  Christopher H Mauney; LeAnn C Rogers; Reuben S Harris; Larry W Daniel; Nelmi O Devarie-Baez; Hanzhi Wu; Cristina M Furdui; Leslie B Poole; Fred W Perrino; Thomas Hollis
Journal:  Antioxid Redox Signal       Date:  2017-04-18       Impact factor: 8.401

Review 5.  From structure to redox: The diverse functional roles of disulfides and implications in disease.

Authors:  Tyler J Bechtel; Eranthie Weerapana
Journal:  Proteomics       Date:  2017-03       Impact factor: 3.984

6.  Use of Multiple Ion Fragmentation Methods to Identify Protein Cross-Links and Facilitate Comparison of Data Interpretation Algorithms.

Authors:  Bingqing Zhao; Colin P Reilly; Caroline Davis; Andreas Matouschek; James P Reilly
Journal:  J Proteome Res       Date:  2020-06-04       Impact factor: 4.466

7.  Genetic Incorporation of the Unnatural Amino Acid p-Acetyl Phenylalanine into Proteins for Site-Directed Spin Labeling.

Authors:  Eric G B Evans; Glenn L Millhauser
Journal:  Methods Enzymol       Date:  2015-07-02       Impact factor: 1.600

8.  Connective tissue growth factor (CCN2) is a matricellular preproprotein controlled by proteolytic activation.

Authors:  Ole Jørgen Kaasbøll; Ashish K Gadicherla; Jian-Hua Wang; Vivi Talstad Monsen; Else Marie Valbjørn Hagelin; Meng-Qiu Dong; Håvard Attramadal
Journal:  J Biol Chem       Date:  2018-09-27       Impact factor: 5.157

9.  Structure of the voltage-gated calcium channel Ca(v)1.1 at 3.6 Å resolution.

Authors:  Jianping Wu; Zhen Yan; Zhangqiang Li; Xingyang Qian; Shan Lu; Mengqiu Dong; Qiang Zhou; Nieng Yan
Journal:  Nature       Date:  2016-08-31       Impact factor: 49.962

10.  Structures of phlebovirus glycoprotein Gn and identification of a neutralizing antibody epitope.

Authors:  Yan Wu; Yaohua Zhu; Feng Gao; Yongjun Jiao; Babayemi O Oladejo; Yan Chai; Yuhai Bi; Shan Lu; Mengqiu Dong; Chang Zhang; Guangmei Huang; Gary Wong; Na Li; Yanfang Zhang; Yan Li; Wen-Hai Feng; Yi Shi; Mifang Liang; Rongguang Zhang; Jianxun Qi; George F Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-21       Impact factor: 11.205
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