Literature DB >> 25663955

Longitudinal High-Dimensional Principal Components Analysis with Application to Diffusion Tensor Imaging of Multiple Sclerosis.

Vadim Zipunnikov1, Sonja Greven2, Haochang Shou, Brian Caffo1, Daniel S Reich3, Ciprian Crainiceanu1.   

Abstract

We develop a flexible framework for modeling high-dimensional imaging data observed longitudinally. The approach decomposes the observed variability of repeatedly measured high-dimensional observations into three additive components: a subject-specific imaging random intercept that quantifies the cross-sectional variability, a subject-specific imaging slope that quantifies the dynamic irreversible deformation over multiple realizations, and a subject-visit specific imaging deviation that quantifies exchangeable effects between visits. The proposed method is very fast, scalable to studies including ultra-high dimensional data, and can easily be adapted to and executed on modest computing infrastructures. The method is applied to the longitudinal analysis of diffusion tensor imaging (DTI) data of the corpus callosum of multiple sclerosis (MS) subjects. The study includes 176 subjects observed at 466 visits. For each subject and visit the study contains a registered DTI scan of the corpus callosum at roughly 30,000 voxels.

Entities:  

Keywords:  brain imaging data; diffusion tensor imaging; linear mixed model; multiple sclerosis; principal components

Year:  2014        PMID: 25663955      PMCID: PMC4316386          DOI: 10.1214/14-aoas748

Source DB:  PubMed          Journal:  Ann Appl Stat        ISSN: 1932-6157            Impact factor:   2.083


  21 in total

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3.  Functional generalized linear models with images as predictors.

Authors:  Philip T Reiss; R Todd Ogden
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Journal:  J R Stat Soc Series B Stat Methodol       Date:  2006-04-01       Impact factor: 4.488

6.  Generalized Multilevel Functional Regression.

Authors:  Ciprian M Crainiceanu; Ana-Maria Staicu; Chong-Zhi Di
Journal:  J Am Stat Assoc       Date:  2009-12-01       Impact factor: 5.033

7.  Penalized functional regression analysis of white-matter tract profiles in multiple sclerosis.

Authors:  Jeff Goldsmith; Ciprian M Crainiceanu; Brian S Caffo; Daniel S Reich
Journal:  Neuroimage       Date:  2011-04-30       Impact factor: 6.556

8.  MULTILEVEL FUNCTIONAL PRINCIPAL COMPONENT ANALYSIS.

Authors:  Chong-Zhi Di; Ciprian M Crainiceanu; Brian S Caffo; Naresh M Punjabi
Journal:  Ann Appl Stat       Date:  2009-03-01       Impact factor: 2.083

9.  Automated vs. conventional tractography in multiple sclerosis: variability and correlation with disability.

Authors:  Daniel S Reich; Arzu Ozturk; Peter A Calabresi; Susumu Mori
Journal:  Neuroimage       Date:  2009-11-26       Impact factor: 6.556

10.  Bayesian Nonparametric Functional Data Analysis Through Density Estimation.

Authors:  Abel Rodríguez; David B Dunson; Alan E Gelfand
Journal:  Biometrika       Date:  2009       Impact factor: 2.445

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  15 in total

1.  Bayesian longitudinal low-rank regression models for imaging genetic data from longitudinal studies.

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2.  Statistical modeling of time-dependent fMRI activation effects.

Authors:  Stefanie Kalus; Ludwig Bothmann; Christina Yassouridis; Michael Czisch; Philipp G Sämann; Ludwig Fahrmeir
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3.  Parametrization of white matter manifold-like structures using principal surfaces.

Authors:  Chen Yue; Vadim Zipunnikov; Pierre-Louis Bazin; Dzung Pham; Daniel Reich; Ciprian Crainiceanu; Brian Caffo
Journal:  J Am Stat Assoc       Date:  2016-10-18       Impact factor: 5.033

4.  FMEM: Functional Mixed Effects Models for Longitudinal Functional Responses.

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Authors:  Erjia Cui; Andrew Leroux; Ekaterina Smirnova; Ciprian M Crainiceanu
Journal:  J Comput Graph Stat       Date:  2021-08-04       Impact factor: 1.884

6.  Convergent brain microstructure across multiple genetic models of schizophrenia and autism spectrum disorder: A feasibility study.

Authors:  Brian R Barnett; Cameron P Casey; Maribel Torres-Velázquez; Paul A Rowley; John-Paul J Yu
Journal:  Magn Reson Imaging       Date:  2020-04-13       Impact factor: 2.546

7.  Making use of longitudinal information in pattern recognition.

Authors:  Leon M Aksman; David J Lythgoe; Steven C R Williams; Martha Jokisch; Christoph Mönninghoff; Johannes Streffer; Karl-Heinz Jöckel; Christian Weimar; Andre F Marquand
Journal:  Hum Brain Mapp       Date:  2016-07-25       Impact factor: 5.038

8.  Functional Nonlinear Mixed Effects Models for Longitudinal Image Data.

Authors:  Xinchao Luo; Lixing Zhu; Linglong Kong; Hongtu Zhu
Journal:  Inf Process Med Imaging       Date:  2015

9.  Logistic regression error-in-covariate models for longitudinal high-dimensional covariates.

Authors:  Hyung Park; Seonjoo Lee
Journal:  Stat       Date:  2019-12-26

10.  Quantifying the lifetime circadian rhythm of physical activity: a covariate-dependent functional approach.

Authors:  Luo Xiao; Lei Huang; Jennifer A Schrack; Luigi Ferrucci; Vadim Zipunnikov; Ciprian M Crainiceanu
Journal:  Biostatistics       Date:  2014-10-30       Impact factor: 5.899

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