| Literature DB >> 25662905 |
Danielle N Margalit1, Kristina M Jordahl2, Lillian Werner3, Xiaodong Wang4, Mary Gwo-Shu Lee4, Kathryn L Penney5, Julie L Batista5, Neil E Martin6, June M Chan7, Philip W Kantoff4, Meir J Stampfer5, Paul L Nguyen6, Lorelei A Mucci5.
Abstract
BACKGROUND: Genetic variants in antioxidant pathways might decrease the efficacy of radiation therapy (RT) by suppressing the generation of reactive oxygen species. We studied the association between single nucleotide polymorphisms (SNPs) in the antioxidant gene superoxide dismutase-2 (SOD2) and cancer-specific outcomes after RT. PATIENTS AND METHODS: Among 816 prostate cancer patients who received radiation as primary therapy from the Physicians' Health Study and the Health Professionals Follow-up Study, we evaluated the association of 7 tagging SNPs in SOD2 with lethal prostate cancer (death from prostate cancer or distant metastasis among living patients). We sought to validate findings in a separate cohort of 612 prostate cancer patients treated with RT with a greater proportion of intermediate and high-risk Gleason scores at the Dana-Farber Cancer Institute. Genetic effects were analyzed using a codominant model, using the genotype homozygous for the major allele as baseline.Entities:
Keywords: Antioxidant; Free radicals; Predictive biomarkers; Reactive oxygen species; SOD2
Mesh:
Substances:
Year: 2015 PMID: 25662905 PMCID: PMC5038132 DOI: 10.1016/j.clgc.2014.12.018
Source DB: PubMed Journal: Clin Genitourin Cancer ISSN: 1558-7673 Impact factor: 2.872
Figure 1Simplified schema of the relationship between SOD2, reactive oxygen species (ROS), and other enzymes involved in free-radical scavenging in tissue.
Patient characteristics at diagnosis for the test and validation cohorts
| Test cohort (n=816) | Validation cohort (n=612) | ||
|---|---|---|---|
| Follow-up (years), median | 10.2 | 6.8 | |
| Age at treatment (years), median [IQR] | 73 [68,76] | 64 [59,70] | |
| Gleason Score, no. (%) | 2–6 | 486 (60) | 148 (24) |
| 7 | 196 (24) | 261 (43) | |
| 8–10 | 85 (10) | 173 (28) | |
| Unknown | 49 (6) | 30 (5) | |
| Clinical stage, no. (%) | T1/T2 | 744 (91) | 458 (75) |
| T3/T4/N1 | 50 (6) | 23 (4) | |
| Unknown | 22 (3) | 131 (21) | |
| PSA at diagnosis, median [IQR] | 7.3 ng/mL [5.4,11.0] | 7.7 ng/mL [5.2,15] | |
| Year of treatment, no. (%) | 1982–1991 | 83 (10) | 18 (3) |
| 1992–2001 | 535 (66) | 285 (47) | |
| 2002–2010 | 198 (24) | 309 (51) | |
Abbreviations: No. – number; IQR – interquartile range; PSA – prostate-specific antigen
Allelic variation of the 7 candidate single nucleotide polymorphisms (SNPs) in the SOD2 gene among study patients in the test (N=816) and validation (N=612) cohorts of men with prostate cancer treated with radiation
| SNP | Major/Minor Allele | MAF (Test) | MAF (Validation) | Type | Annotation |
|---|---|---|---|---|---|
| rs6917589 | (A/G) | 24 % | 24% | - | 31 of |
| rs2758331 | (G/T) | 48% | 47% | Synonymous | Intron |
| rs4880 | (T/C) | 49% | 49% | Non- Synonymous (Valine/Alanine) | Exon2 |
| rs2758329 | (A/G) | 48% | 48% | - | 31 of |
| rs5746151 | (G/A) | <10% | <10% | - | 31 of |
| rs2842980 | (A/T) | 21% | 21% | - | 31 of |
| rs7855 | (T/C) | <10% | <10% | - | 31 UTR, exon |
Abbreviations: SNP – Single nucleotide polymorphism; MAF – minor allele frequency; A – adenine; G – guanine; T – thymine; C – cytosine; UTR – untranslated region
SNPs are in linkage disequilibrium with each other
Associations between SOD2 polymorphisms and lethal prostate cancer among prostate cancer patients undergoing radiation therapy or radical prostatectomy in the test cohort, adjusted for Gleason score, PSA, clinical stage, age at treatment, year of diagnosis and cohort (PHS or HPFS)
| Radiation Therapy Cohort (N=816)
| Radical Prostatectomy Cohort (N=1094)
| |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP | Total | Events | Unadjusted HR (95% CI) | P-value | Adjusted HR (95% CI) | P-value | Total | Events | Unadjusted HR (95% CI) | P-value | Adjusted HR (95% CI) | P-value |
| rs6917589 | ||||||||||||
| GG | 46 | 5 | 1.70 (0.66, 4.38) | 0.06 | 2.62 (0.98, 7.02) | 0.006 | 39 | 2 | 0.86 (0.21, 3.56) | 0.64 | 0.78 (0.18, 3.25) | 0.54 |
| AG | 230 | 32 | 1.80 (1.10, 2.94) | 2.21 (1.31, 3.72) | 334 | 25 | 1.26 (0.75, 2.10) | 1.31 (0.76, 2.25) | ||||
| AA | 429 | 32 | REF | REF | 598 | 35 | REF | REF | ||||
| rs2758331 | ||||||||||||
| TT | 177 | 9 | 0.52 (0.24, 1.17) | 0.05 | 0.37 (0.16, 0.83) | 0.04 | 234 | 18 | 1.05 (0.55, 2.01) | 0.66 | 1.10 (0.56, 2.13) | 0.67 |
| GT | 338 | 46 | 1.28 (0.74, 2.20) | 0.84 (0.47, 1.50) | 498 | 31 | 0.82 (0.47, 1.46) | 0.84 (0.47, 1.52) | ||||
| GG | 193 | 18 | REF | REF | 246 | 19 | REF | REF | ||||
| rs4880 | ||||||||||||
| CC | 182 | 9 | 0.52 (0.23, 1.17) | 0.04 | 0.37 (0.16, 0.84) | 0.04 | 254 | 19 | 1.02 (0.53, 1.94) | 0.77 | 1.10 (0.57, 2.13) | 0.67 |
| TC | 343 | 47 | 1.31 (0.75, 2.28) | 0.90 (0.50, 1.61) | 495 | 32 | 0.85 (0.48, 1.51) | 0.85 (0.47, 1.53) | ||||
| TT | 182 | 17 | REF | REF | 232 | 18 | REF | REF | ||||
| rs2758329 | ||||||||||||
| GG | 170 | 9 | 0.53 (0.24, 1.18) | 0.05 | 0.39 (0.17, 0.88) | 0.06 | 228 | 18 | 0.99 (0.52, 1.87) | 0.27 | 1.08 (0.56, 2.09) | 0.37 |
| AG | 336 | 46 | 1.27 (0.74, 2.19) | 0.86 (0.48, 1.53) | 500 | 27 | 0.66 (0.37, 1.18) | 0.72 (0.40, 1.31) | ||||
| AA | 188 | 18 | REF | REF | 236 | 20 | REF | REF | ||||
| rs5746151 | ||||||||||||
| GA/AA | 86 | 7 | 0.75 (0.35, 1.65) | 0.48 | 0.59 (0.25, 1.37) | 0.22 | 121 | 6 | 0.71 (0.31, 1.64) | 0.42 | 0.62 (0.27, 1.46) | 0.27 |
| GG | 627 | 63 | REF | 858 | 61 | REF | REF | |||||
| rs2842980 | ||||||||||||
| TT | 35 | 2 | 0.59 (0.14, 2.42) | 0.69 | 0.86 (0.20, 3.62) | 0.64 | 43 | 3 | 0.92 (0.29, 2.97) | 0.94 | 0.78 (0.24, 2.53) | 0.79 |
| AT | 224 | 25 | 1.09 (0.67, 1.78) | 1.26 (0.76, 2.07) | 327 | 22 | 0.91 (0.55, 1.53) | 0.85 (0.50, 1.44) | ||||
| AA | 444 | 46 | REF | REF | 604 | 43 | REF | REF | ||||
| rs7855 | ||||||||||||
| TC/CC | 75 | 7 | 0.90 (0.41, 1.97) | 0.80 | 0.97 (0.44, 2.13) | 0.94 | 110 | 6 | 0.74 (0.32, 1.71) | 0.48 | 0.45 (0.19, 1.06) | 0.07 |
| TT | 639 | 66 | REF | REF | 875 | 64 | REF | REF | ||||
Abbreviations: CI – Confidence Interval; SNP – Single nucleotide polymorphism; REF – reference;
SNPs in linkage disequilibrium with each other
Associations between SOD2 polymorphisms and distant metastases in the validation cohort (N=612), Dana-Farber Cancer Institute prostate cancer patients who underwent radiation therapy
| SNP | Total | Events | Unadjusted HR (95% CI) | P-value | Adjusted HR (95% CI) | P-value |
|---|---|---|---|---|---|---|
| SOD2 | ||||||
| rs6917589 | 0.97 | 0.97 | ||||
| GG | 42 | 13 | 1.04 (0.59, 1.86) | 1.04 (0.58, 1.88) | ||
| AG | 210 | 51 | 0.97 (0.69, 1.36) | 1.05 (0.74, 1.48) | ||
| AA | 354 | 100 | REF | REF | ||
| rs2758331 | 0.99 | 0.85 | ||||
| TT | 128 | 36 | 1.02 (0.66, 1.57) | 0.99 (0.63, 1.55) | ||
| GT | 296 | 82 | 1.03 (0.72, 1.48) | 1.09 (0.76, 1.58) | ||
| GG | 180 | 46 | REF | REF | ||
| rs4880 | 0.94 | 0.87 | ||||
| CC | 141 | 38 | 0.93 (0.60, 1.44) | 0.93 (0.60, 1.46) | ||
| TC | 298 | 82 | 0.98 (0.68, 1.42) | 1.04 (0.71, 1.52) | ||
| TT | 165 | 44 | REF | REF | ||
| rs2758329 | 0.99 | 0.90 | ||||
| GG | 136 | 37 | 0.97 (0.63, 1.50) | 0.94 (0.60, 1.46) | ||
| AG | 296 | 82 | 1.00 (0.70, 1.44) | 1.03 (0.71, 1.50) | ||
| AA | 173 | 45 | REF | REF | ||
| rs5746151 | 0.18 | 0.14 | ||||
| GA/AA | 78 | 25 | 1.34 (0.87, 2.06) | 1.40 (0.89, 2.20) | ||
| GG | 528 | 139 | REF | REF | ||
| rs2842980 | 0.54 | 0.33 | ||||
| AT/TT | 238 | 63 | 0.91 (0.66, 1.24) | 0.85 (0.61, 1.18) | ||
| AA | 367 | 101 | REF | REF | ||
| rs7855 | 0.63 | 0.14 | ||||
| TC/CC | 72 | 19 | 0.89 (0.55, 1.44) | 0.69 (0.41, 1.14) | ||
| TT | 534 | 145 | REF | REF | ||
Abbreviations: SNP – Single nucleotide polymorphism; HR – Hazard ratio; CI – Confidence Interval; REF – reference