Literature DB >> 25656898

Database of genomic biomarkers for cancer drugs and clinical targetability in solid tumors.

Rodrigo Dienstmann1, In Sock Jang2, Brian Bot2, Stephen Friend2, Justin Guinney2.   

Abstract

SUMMARY: Comprehensive genomic profiling is expected to revolutionize cancer therapy. In this Prospective, we present the prevalence of mutations and copy-number alterations with predictive associations across solid tumors at different levels of stringency for gene-drug targetability. More than 90% of The Cancer Genome Atlas samples have potentially targetable alterations, the majority with multiple events, illustrating the challenges for treatment prioritization given the complexity of the genomic landscape. Nearly 80% of the variants in rarely mutated oncogenes are of uncertain functional significance, reflecting the gap in our understanding of the relevance of many alterations potentially linked to therapeutic actions. Access to targeted agents in early clinical trials could affect treatment decision in 75% of patients with cancer. Prospective implementation of large-scale molecular profiling and standardized reports of predictive biomarkers are fundamental steps for making precision cancer medicine a reality. ©2015 American Association for Cancer Research.

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Year:  2015        PMID: 25656898      PMCID: PMC4825796          DOI: 10.1158/2159-8290.CD-14-1118

Source DB:  PubMed          Journal:  Cancer Discov        ISSN: 2159-8274            Impact factor:   39.397


  25 in total

Review 1.  Standardized decision support in next generation sequencing reports of somatic cancer variants.

Authors:  Rodrigo Dienstmann; Fei Dong; Darrell Borger; Dora Dias-Santagata; Leif W Ellisen; Long P Le; A John Iafrate
Journal:  Mol Oncol       Date:  2014-04-04       Impact factor: 6.603

2.  Clinical response to a lapatinib-based therapy for a Li-Fraumeni syndrome patient with a novel HER2V659E mutation.

Authors:  Violeta Serra; Ana Vivancos; Xose S Puente; Enriqueta Felip; Daniel Silberschmidt; Ginevra Caratù; Josep-Lluís Parra; Leticia De Mattos-Arruda; Judit Grueso; Javier Hernández-Losa; Joaquín Arribas; Ludmila Prudkin; Paolo Nuciforo; Maurizio Scaltriti; Joan Seoane; José Baselga
Journal:  Cancer Discov       Date:  2013-08-15       Impact factor: 39.397

Review 3.  Genomic medicine frontier in human solid tumors: prospects and challenges.

Authors:  Rodrigo Dienstmann; Jordi Rodon; Jordi Barretina; Josep Tabernero
Journal:  J Clin Oncol       Date:  2013-04-15       Impact factor: 44.544

Review 4.  Cancer genome landscapes.

Authors:  Bert Vogelstein; Nickolas Papadopoulos; Victor E Velculescu; Shibin Zhou; Luis A Diaz; Kenneth W Kinzler
Journal:  Science       Date:  2013-03-29       Impact factor: 47.728

5.  Activating mTOR mutations in a patient with an extraordinary response on a phase I trial of everolimus and pazopanib.

Authors:  Nikhil Wagle; Brian C Grabiner; Eliezer M Van Allen; Eran Hodis; Susanna Jacobus; Jeffrey G Supko; Michelle Stewart; Toni K Choueiri; Leena Gandhi; James M Cleary; Aymen A Elfiky; Mary Ellen Taplin; Edward C Stack; Sabina Signoretti; Massimo Loda; Geoffrey I Shapiro; David M Sabatini; Eric S Lander; Stacey B Gabriel; Philip W Kantoff; Levi A Garraway; Jonathan E Rosenberg
Journal:  Cancer Discov       Date:  2014-03-13       Impact factor: 39.397

6.  A patient-derived somatic mutation in the epidermal growth factor receptor ligand-binding domain confers increased sensitivity to cetuximab in head and neck cancer.

Authors:  El Mustapha Bahassi; Ya-Qin Li; Trisha M Wise-Draper; Li Deng; Jiang Wang; Colleen N Darnell; Keith M Wilson; Susanne I Wells; Peter J Stambrook; Olivier Rixe
Journal:  Eur J Cancer       Date:  2013-04-08       Impact factor: 9.162

7.  Inhibitor-sensitive FGFR2 and FGFR3 mutations in lung squamous cell carcinoma.

Authors:  Rachel G Liao; Joonil Jung; Jeremy Tchaicha; Matthew D Wilkerson; Andrey Sivachenko; Ellen M Beauchamp; Qingsong Liu; Trevor J Pugh; Chandra Sekhar Pedamallu; D Neil Hayes; Nathanael S Gray; Gad Getz; Kwok-Kin Wong; Robert I Haddad; Matthew Meyerson; Peter S Hammerman
Journal:  Cancer Res       Date:  2013-06-20       Impact factor: 12.701

8.  Discovery and saturation analysis of cancer genes across 21 tumour types.

Authors:  Michael S Lawrence; Petar Stojanov; Craig H Mermel; James T Robinson; Levi A Garraway; Todd R Golub; Matthew Meyerson; Stacey B Gabriel; Eric S Lander; Gad Getz
Journal:  Nature       Date:  2014-01-05       Impact factor: 49.962

9.  BRAF mutant gastrointestinal stromal tumor: first report of regression with BRAF inhibitor dabrafenib (GSK2118436) and whole exomic sequencing for analysis of acquired resistance.

Authors:  G S Falchook; J C Trent; M C Heinrich; C Beadling; J Patterson; C C Bastida; S C Blackman; R Kurzrock
Journal:  Oncotarget       Date:  2013-02

10.  Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine.

Authors:  Eliezer M Van Allen; Nikhil Wagle; Petar Stojanov; Danielle L Perrin; Kristian Cibulskis; Sara Marlow; Judit Jane-Valbuena; Dennis C Friedrich; Gregory Kryukov; Scott L Carter; Aaron McKenna; Andrey Sivachenko; Mara Rosenberg; Adam Kiezun; Douglas Voet; Michael Lawrence; Lee T Lichtenstein; Jeff G Gentry; Franklin W Huang; Jennifer Fostel; Deborah Farlow; David Barbie; Leena Gandhi; Eric S Lander; Stacy W Gray; Steven Joffe; Pasi Janne; Judy Garber; Laura MacConaill; Neal Lindeman; Barrett Rollins; Philip Kantoff; Sheila A Fisher; Stacey Gabriel; Gad Getz; Levi A Garraway
Journal:  Nat Med       Date:  2014-05-18       Impact factor: 53.440

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  45 in total

Review 1.  Advances in the Molecular Analysis of Soft Tissue Tumors and Clinical Implications.

Authors:  Adrian Marino-Enriquez
Journal:  Surg Pathol Clin       Date:  2015-09

2.  Advances in Tumor Sampling and Sequencing in Breast Cancer and their Application in Precision Diagnostics and Therapeutics.

Authors:  Amos Chungwon Lee; Han-Byoel Lee; Huiran Yeom; Seo Woo Song; Su Deok Kim; Ahyoun Choi; Sumin Lee; Yongju Lee; Wonshik Han; Sunghoon Kwon
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

3.  Database of evidence for precision oncology portal.

Authors:  Sam Q Sun; R Jay Mashl; Sohini Sengupta; Adam D Scott; Weihua Wang; Prag Batra; Liang-Bo Wang; Matthew A Wyczalkowski; Li Ding
Journal:  Bioinformatics       Date:  2018-12-15       Impact factor: 6.937

Review 4.  Drug repurposing in oncology--patient and health systems opportunities.

Authors:  Francesco Bertolini; Vikas P Sukhatme; Gauthier Bouche
Journal:  Nat Rev Clin Oncol       Date:  2015-10-20       Impact factor: 66.675

5.  Molecularly targeted drug combinations demonstrate selective effectiveness for myeloid- and lymphoid-derived hematologic malignancies.

Authors:  Stephen E Kurtz; Christopher A Eide; Andy Kaempf; Vishesh Khanna; Samantha L Savage; Angela Rofelty; Isabel English; Hibery Ho; Ravi Pandya; William J Bolosky; Hoifung Poon; Michael W Deininger; Robert Collins; Ronan T Swords; Justin Watts; Daniel A Pollyea; Bruno C Medeiros; Elie Traer; Cristina E Tognon; Motomi Mori; Brian J Druker; Jeffrey W Tyner
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-07       Impact factor: 11.205

6.  mTCTScan: a comprehensive platform for annotation and prioritization of mutations affecting drug sensitivity in cancers.

Authors:  Mulin Jun Li; Hongcheng Yao; Dandan Huang; Huanhuan Liu; Zipeng Liu; Hang Xu; Yiming Qin; Jeanette Prinz; Weiyi Xia; Panwen Wang; Bin Yan; Nhan L Tran; Jean-Pierre Kocher; Pak C Sham; Junwen Wang
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

7.  A network medicine approach to build a comprehensive atlas for the prognosis of human cancer.

Authors:  Fan Zhang; Chunyan Ren; Kwun Kit Lau; Zihan Zheng; Geming Lu; Zhengzi Yi; Yongzhong Zhao; Fei Su; Shaojun Zhang; Bin Zhang; Eric A Sobie; Weijia Zhang; Martin J Walsh
Journal:  Brief Bioinform       Date:  2016-08-24       Impact factor: 11.622

Review 8.  Targeting TANK-binding kinase 1 (TBK1) in cancer.

Authors:  Or-Yam Revach; Shuming Liu; Russell W Jenkins
Journal:  Expert Opin Ther Targets       Date:  2020-10-05       Impact factor: 6.902

Review 9.  Personalized therapy for lung cancer: striking a moving target.

Authors:  Suchita Pakkala; Suresh S Ramalingam
Journal:  JCI Insight       Date:  2018-08-09

Review 10.  Precision Oncology: The Road Ahead.

Authors:  Daniela Senft; Mark D M Leiserson; Eytan Ruppin; Ze'ev A Ronai
Journal:  Trends Mol Med       Date:  2017-09-05       Impact factor: 11.951

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