Literature DB >> 25655237

Mechanical design of DNA nanostructures.

Carlos E Castro1, Hai-Jun Su, Alexander E Marras, Lifeng Zhou, Joshua Johnson.   

Abstract

Structural DNA nanotechnology is a rapidly emerging field that has demonstrated great potential for applications such as single molecule sensing, drug delivery, and templating molecular components. As the applications of DNA nanotechnology expand, a consideration of their mechanical behavior is becoming essential to understand how these structures will respond to physical interactions. This review considers three major avenues of recent progress in this area: (1) measuring and designing mechanical properties of DNA nanostructures, (2) designing complex nanostructures based on imposed mechanical stresses, and (3) designing and controlling structurally dynamic nanostructures. This work has laid the foundation for mechanically active nanomachines that can generate, transmit, and respond to physical cues in molecular systems.

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Year:  2015        PMID: 25655237     DOI: 10.1039/c4nr07153k

Source DB:  PubMed          Journal:  Nanoscale        ISSN: 2040-3364            Impact factor:   7.790


  23 in total

1.  Digitally encoded DNA nanostructures for multiplexed, single-molecule protein sensing with nanopores.

Authors:  Nicholas A W Bell; Ulrich F Keyser
Journal:  Nat Nanotechnol       Date:  2016-04-04       Impact factor: 39.213

2.  Emerging uses of DNA mechanical devices.

Authors:  Aaron T Blanchard; Khalid Salaita
Journal:  Science       Date:  2019-09-13       Impact factor: 47.728

3.  Programmable Multivalent DNA-Origami Tension Probes for Reporting Cellular Traction Forces.

Authors:  Palash K Dutta; Yun Zhang; Aaron T Blanchard; Chenghao Ge; Muaz Rushdi; Kristin Weiss; Cheng Zhu; Yonggang Ke; Khalid Salaita
Journal:  Nano Lett       Date:  2018-07-05       Impact factor: 11.189

4.  Modulating the chemo-mechanical response of structured DNA assemblies through binding molecules.

Authors:  Chanseok Lee; Young-Joo Kim; Kyung Soo Kim; Jae Young Lee; Do-Nyun Kim
Journal:  Nucleic Acids Res       Date:  2021-12-02       Impact factor: 16.971

5.  Design Approaches and Computational Tools for DNA Nanostructures.

Authors:  Heeyuen Koh; Jae Gyung Lee; Jae Young Lee; Ryan Kim; Osamu Tabata; Kim Jin-Woo; DO-Nyun Kim
Journal:  IEEE Open J Nanotechnol       Date:  2021-10-14

6.  Probing the Mechanical Properties of DNA Nanostructures with Metadynamics.

Authors:  Will T Kaufhold; Wolfgang Pfeifer; Carlos E Castro; Lorenzo Di Michele
Journal:  ACS Nano       Date:  2022-05-17       Impact factor: 18.027

7.  Massively Parallelized Molecular Force Manipulation with On-Demand Thermal and Optical Control.

Authors:  Hanquan Su; Joshua M Brockman; Yuxin Duan; Navoneel Sen; Hemani Chhabra; Alisina Bazrafshan; Aaron T Blanchard; Travis Meyer; Brooke Andrews; Jonathan P K Doye; Yonggang Ke; R Brian Dyer; Khalid Salaita
Journal:  J Am Chem Soc       Date:  2021-11-11       Impact factor: 16.383

8.  Automated Sequence Design of 3D Polyhedral Wireframe DNA Origami with Honeycomb Edges.

Authors:  Hyungmin Jun; Tyson R Shepherd; Kaiming Zhang; William P Bricker; Shanshan Li; Wah Chiu; Mark Bathe
Journal:  ACS Nano       Date:  2019-01-24       Impact factor: 15.881

9.  Free energy landscape of salt-actuated reconfigurable DNA nanodevices.

Authors:  Ze Shi; Gaurav Arya
Journal:  Nucleic Acids Res       Date:  2020-01-24       Impact factor: 16.971

10.  A nanoscale DNA force spectrometer capable of applying tension and compression on biomolecules.

Authors:  Yuchen Wang; Jenny V Le; Kyle Crocker; Michael A Darcy; Patrick D Halley; Dengke Zhao; Nick Andrioff; Cassie Croy; Michael G Poirier; Ralf Bundschuh; Carlos E Castro
Journal:  Nucleic Acids Res       Date:  2021-09-07       Impact factor: 19.160

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