Literature DB >> 25654666

(77)Se chemical shift tensor of L-selenocystine: experimental NMR measurements and quantum chemical investigations of structural effects.

Jochem Struppe1, Yong Zhang, Sharon Rozovsky.   

Abstract

The genetically encoded amino acid selenocysteine and its dimeric form, selenocystine, are both utilized by nature. They are found in active sites of selenoproteins, enzymes that facilitate a diverse range of reactions, including the detoxification of reactive oxygen species and regulation of redox pathways. Due to selenocysteine and selenocystine's specialized biological roles, it is of interest to examine their (77)Se NMR properties and how those can in turn be employed to study biological systems. We report the solid-state (77)Se NMR measurements of the L-selenocystine chemical shift tensor, which provides the first experimental chemical shift tensor information on selenocysteine-containing systems. Quantum chemical calculations of L-selenocystine models were performed to help understand various structural effects on (77)Se L-selenocystine's chemical shift tensor. The effects of protonation state, protein environment, and substituent of selenium-bonded carbon on the isotropic chemical shift were found to be in a range of ca. 10-20 ppm. However, the conformational effect was found to be much larger, spanning ca. 600 ppm for the C-Se-Se-C dihedral angle range of -180° to +180°. Our calculations show that around the minimum energy structure with a C-Se-Se-C dihedral angle of ca. -90°, the energy costs to alter the dihedral angle in the range from -120° to -60° are within only 2.5 kcal/mol. This makes it possible to realize these conformations in a protein or crystal environment. (77)Se NMR was found to be a sensitive probe to such changes and has an isotropic chemical shift range of 272 ± 30 ppm for this energetically favorable conformation range. The energy-minimized structures exhibited calculated isotropic shifts that lay within 3-9% of those reported in previous solution NMR studies. The experimental solid-state NMR isotropic chemical shift is near the lower bound of this calculated range for these readily accessible conformations. These results suggest that the dihedral information may be deduced for a protein with appropriate structural models. These first-time experimental and theoretical results will facilitate future NMR studies of selenium-containing compounds and proteins.

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Year:  2015        PMID: 25654666      PMCID: PMC4581879          DOI: 10.1021/jp510857s

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  40 in total

1.  Hydrolysis theory for cisplatin and its analogues based on density functional studies.

Authors:  Y Zhang; Z Guo; X Z You
Journal:  J Am Chem Soc       Date:  2001-09-26       Impact factor: 15.419

2.  Site-specific pK(a) determination of selenocysteine residues in selenovasopressin by using 77Se NMR spectroscopy.

Authors:  Mehdi Mobli; David Morgenstern; Glenn F King; Paul F Alewood; Markus Muttenthaler
Journal:  Angew Chem Int Ed Engl       Date:  2011-10-14       Impact factor: 15.336

3.  Activation energies of selenoxide elimination from Se-substituted selenocysteine.

Authors:  Craig A Bayse; Benjamin D Allison
Journal:  J Mol Model       Date:  2006-05-25       Impact factor: 1.810

4.  Ab initio calculations of NMR chemical shifts.

Authors:  Leah B Casabianca; Angel C de Dios
Journal:  J Chem Phys       Date:  2008-02-07       Impact factor: 3.488

5.  Identification and characterization of a selenoprotein family containing a diselenide bond in a redox motif.

Authors:  Valentina A Shchedrina; Sergey V Novoselov; Mikalai Yu Malinouski; Vadim N Gladyshev
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-22       Impact factor: 11.205

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Authors:  H Tanaka; K Soda
Journal:  Methods Enzymol       Date:  1987       Impact factor: 1.600

7.  A combined experimental and quantum chemistry study of selenium chemical shift tensors.

Authors:  Bryan A Demko; Klaus Eichele; Roderick E Wasylishen
Journal:  J Phys Chem A       Date:  2006-12-21       Impact factor: 2.781

8.  The theoretical 77Se chemical shift as a probe of selenium state in selenoproteins and their mimics.

Authors:  Craig A Bayse
Journal:  Inorg Chem       Date:  2004-02-23       Impact factor: 5.165

9.  Iron porphyrin carbenes as catalytic intermediates: structures, Mössbauer and NMR spectroscopic properties, and bonding.

Authors:  Rahul L Khade; Wenchao Fan; Yan Ling; Liu Yang; Eric Oldfield; Yong Zhang
Journal:  Angew Chem Int Ed Engl       Date:  2014-06-06       Impact factor: 15.336

10.  A solid state 13C NMR, crystallographic, and quantum chemical investigation of phenylalanine and tyrosine residues in dipeptides and proteins.

Authors:  Dushyant Mukkamala; Yong Zhang; Eric Oldfield
Journal:  J Am Chem Soc       Date:  2007-05-17       Impact factor: 15.419

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  4 in total

1.  77Se NMR Probes the Protein Environment of Selenomethionine.

Authors:  Qingqing Chen; Shiping Xu; Xingyu Lu; Michael V Boeri; Yuliya Pepelyayeva; Elizabeth L Diaz; Sunil-Datta Soni; Marc Allaire; Martin B Forstner; Brian J Bahnson; Sharon Rozovsky
Journal:  J Phys Chem B       Date:  2020-01-07       Impact factor: 2.991

2.  77Se-13C based dipolar correlation experiments to map selenium sites in microcrystalline proteins.

Authors:  Caitlin M Quinn; Shiping Xu; Guangjin Hou; Qingqing Chen; Deepak Sail; R Andrew Byrd; Sharon Rozovsky
Journal:  J Biomol NMR       Date:  2022-03-23       Impact factor: 2.582

3.  Solid-State 77Se NMR of Organoselenium Compounds through Cross Polarization Magic Angle Spinning (CPMAS) Method.

Authors:  Duo Wei; Mengting Han; Lei Yu
Journal:  Sci Rep       Date:  2017-07-25       Impact factor: 4.379

Review 4.  Zero-, one-, two- and three-dimensional supramolecular architectures sustained by SeO chalcogen bonding: A crystallographic survey.

Authors:  Edward R T Tiekink
Journal:  Coord Chem Rev       Date:  2020-10-17       Impact factor: 22.315

  4 in total

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