Kerry L Price1, Reidun K Lillestol1, Chris Ulens2, Sarah C R Lummis1. 1. †Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1QW, United Kingdom. 2. ‡The Laboratory of Structural Neurobiology, Department of Cellular and Molecular Medicine, KU Leuven, Herestraat 49, PB 601, B-3000 Leuven, Belgium.
Abstract
Cys-loop receptors are the site of action of many therapeutic drugs. One of these is the smoking cessation agent varenicline, which has its major therapeutic effects at nicotinic acetylcholine (nACh) receptors but also acts at 5-HT3 receptors. Here, we report the X-ray crystal structure of the 5-HT binding protein (5-HTBP) in complex with varenicline, and test the predicted interactions by probing the potency of varenicline in a range of mutant 5-HT3 receptors expressed in HEK293 cells and Xenopus oocytes. The structure reveals a range of interactions between varenicline and 5-HTBP. We identified residues within 5 Å of varenicline and substituted the equivalent residues in the 5-HT3 receptor with Ala or a residue with similar chemical properties. Functional characterization of these mutant 5-HT3 receptors, using a fluorescent membrane potential dye in HEK cells and voltage clamp in oocytes, supports interactions between varenicline and the receptor that are similar to those in 5-HTBP. The structure also revealed C-loop closure that was less than in the 5-HT-bound 5-HTBP, and hydrogen bonding between varenicline and the complementary face of the binding pocket via a water molecule, which are characteristics consistent with partial agonist behavior of varenicline in the 5-HT3 receptor. Together, these data reveal detailed insights into the molecular interaction of varenicline in the 5-HT3 receptor.
Cys-loop receptors are the site of action of many therapeutic drugs. One of these is the smoking cessation agent varenicline, which has its major therapeutic effects at nicotinic acetylcholine (nACh) receptors but also acts at 5-HT3 receptors. Here, we report the X-ray crystal structure of the 5-HT binding protein (5-HTBP) in complex with varenicline, and test the predicted interactions by probing the potency of varenicline in a range of mutant 5-HT3 receptors expressed in HEK293 cells and Xenopus oocytes. The structure reveals a range of interactions between varenicline and 5-HTBP. We identified residues within 5 Å of varenicline and substituted the equivalent residues in the 5-HT3 receptor with Ala or a residue with similar chemical properties. Functional characterization of these mutant 5-HT3 receptors, using a fluorescent membrane potential dye in HEK cells and voltage clamp in oocytes, supports interactions between varenicline and the receptor that are similar to those in 5-HTBP. The structure also revealed C-loop closure that was less than in the 5-HT-bound 5-HTBP, and hydrogen bonding between varenicline and the complementary face of the binding pocket via a water molecule, which are characteristics consistent with partial agonist behavior of varenicline in the 5-HT3 receptor. Together, these data reveal detailed insights into the molecular interaction of varenicline in the 5-HT3 receptor.
Entities:
Keywords:
Cys-loop receptor; Ligand-gated ion channel; serotonin receptor
The 5-HT3 receptors belong to the
Cys-loop family of
pentameric ligand-gated ion channels, a family that also includes
nicotinic acetylcholine (nACh), GABA, and glycine receptors.[1] They play important roles in fast neurotransmission
in the central and peripheral nervous systems. There are five 5-HT3 receptor subtypes (5-HT3A–5-HT3E). Subunits of 5-HT3A can assemble to form homopentamers,
but the other subtypes must coassemble with 5-HT3A subunits
to form functional receptors. However, it is as yet unclear what effect
subunits 5-HT3C-5-HT3E have on the receptor
function.[2,3]Varenicline is a high affinity partial
agonist of the α4β2
nACh receptor in clinical use for smoking cessation.[4] It is also a full agonist at the α7 nACh receptor.[5] There is considerable overlap between compounds
that act at α7 nACh and 5-HT3 receptors,[6] and recently, we have shown that varenicline
is also a high affinity agonist at the human 5-HT3 receptor.[7] 5-HT3 receptors are located in the
chemoreceptor trigger zone in the area postrema and in the gastrointestinal
tract, where they have roles in regulating gut motility and the emesis
reflex.[8] Antagonists of 5-HT3 receptors, such as ondansetron and palonosetron, are in clinical
use as antiemetics to treat postoperative nausea and vomiting and
chemotherapy-induced nausea and vomiting.[9] Nausea is a common adverse effect reported from patients receiving
varenicline,[4] and it is likely that this
is due to its actions at the 5-HT3 receptor. The design
of improved smoking cessation drugs that do not have such cross-reactivity
at the 5-HT3 receptor would clearly be of benefit.For this aim to be achieved, further information is needed about
the structure–activity relationships of varenicline binding
to different receptors. Here, we present the structure of varenicline
bound to 5-HTBP, an acetylcholine binding protein (AChBP) from Aplysia californica (Ac) engineered to
bind 5-HT with high affinity.[10] This protein
carries the mutations S92E, V140L, K141T, and Q55R (A1B2D1R) and displays affinities for the 5-HT3 receptor antagonist
granisetron and for 5-HT that are 21- and 4.3-fold higher than for
native AChBP, respectively. We have also performed a thorough mutagenesis
study on the human 5-HT3 receptor of residues predicted
to be near the ligand-binding site, characterizing these mutants both
in HEK293 cells using a fluorescent membrane potential dye and in
oocytes using two-electrode voltage clamp electrophysiology. The data
suggest that 5-HTBP is a good structural model for examining ligand
binding interactions, and functional experiments on the 5-HT3 receptors yield additional information on binding modes that cannot
readily be ascertained from structural information.
Results and Discussion
X-ray
Crystal Structure of Varenicline-Bound 5-HTBP
Several crystals
were obtained from crystallization screens. One
of these crystals diffracted to a resolution of 2.3 Å, and a
complete diffraction data set was collected, which allowed for the
determination of the three-dimensional structure of 5-HTBP in complex
with varenicline. The crystal belongs to the space group P41212, and the crystallographic unit cell has
the dimensions 72.8 Å (a), 72.8 Å (b), 479.22 Å (c),
90° (α), 90° (β), 90° (γ) and contains
one pentamer per asymmetric unit. The electron density map was of
excellent quality and difference density could be clearly observed
for varenicline in all five orthosteric ligand binding sites (Figure
S1, Supporting Information). The orientation
of varenicline in this structure is similar to that in the two structures
of varenicline bound to AChBP[11,12] (Figure S2, Supporting Information). In these structures,
however, varenicline is slightly further away from the principal binding
face.
Varenicline Interactions at the Principal Binding Face
Varenicline is located at the interface between two subunits and
has interactions on the principal face with aromatic residues, which
are conserved within the Cys-loop family. The 5-HTBP–varenicline
structure shows hydrogen bonds between the benzazepine nitrogen of
varenicline and the hydroxyl of Y91 (loop A) and the backbone carbonyl
of W145 (loop B), and one a pyrazine nitrogen hydrogen bonds to Y193
(loop C) (Figure 1). The equivalent of these
and other residues within 5 Å of bound varenicline were mutated
in the 5-HT3 receptor to verify the orientation of varenicline;
substitutions were made to residues N128 in loop A, W183 and L184
in loop B, and F226, M228, E229, and Y234 in loop C. The parameters
obtained from concentration response curves determined from these
mutant receptors expressed in HEK cells are in Tables 1 and 2, and typical responses and curves
are shown in Figure 2.
Figure 1
Varenicline bound to
5-HTBP. (A) Location of varenicline (green)
at the interface between two subunits in the orthosteric 5-HTBP binding
site. (B) Alignment of 5-HTBP, AChBP, and the extracellular domain
of the 5-HT3A receptor subunit showing the approximate
location of the A–E binding loops. The residues mutated in
this study are highlighted in purple, and the residues that differ
between 5-HTBP and AChBP in yellow. (C) The 5-HTBP binding pocket
showing the orientation of varenicline (green) and nearby residues
on the principal (blue) and complementary (magenta) faces. The corresponding
5-HT3 receptor residues are in parentheses. (D) Hydrogen
bonds are present between varenicline and residues Y91, Y193, and
W145 on the principal face and residues I104 and I116 on the complementary
face via a water molecule.
Table 1
Concentration
Response Parameters
of 5-HT Obtained from HEK Cells
loop
mutant
5-HT pEC50a (M)
5-HT EC50 (μM)
n
WT
6.51 ± 0.03
0.31
5
A
N128
N128A
5.47 ± 0.10b
3.4
4
N128Q
4.53 ± 0.02b
29
4
B
W183
W183A
3.88 ± 0.05b
130
4
W183Y
4.60 ± 0.03b
25
5
B
L184
L184A
NRc
NRc
6
L184I
5.56 ± 0.05b
2.8
4
C
F226
F226A
4.18 ± 0.05b
170
6
F226Y
5.72 ± 0.06b
1.9
7
C
M228
M228A
5.03 ± 0.04b
9.4
4
M228C
NRc
NRc
6
C
E229
E229A
5.63 ± 0.04b
2.3
6
E229D
6.58 ± 0.05
0.27
3
C
Y234
Y234A
NRc
NRc
6
Y234F
5.89 ± 0.03b
1.3
4
Y234S
NRc
NRc
6
D
W90
W90A
NRc
NRc
6
W90Y
5.66 ± 0.05b
2.2
5
D
R92
R92A
6.06 ± 0.04b
0.87
4
R92Q
4.82 ± 0.04b
15
4
D
Y94
Y94A
7.24 ± 0.03b
0.058
5
Y94F
6.84 ± 0.04
0.14
6
Y94S
7.03 ± 0.06b
0.093
6
S114
S114A
6.31 ± 0.05
0.48
7
S114T
5.87 ± 0.27b
1.4
3
E
Y141
Y141A
NRc
NRc
6
Y141F
6.83 ± 0.03
0.15
3
E
Y143
Y143A
NRc
NRc
6
Y143F
4.98 ± 0.09b
11
4
Y143S
4.35 ± 0.03b
45
3
E
Q151
Q151A
6.13 ± 0.06
0.75
4
Q151N
6.34 ± 0.03
0.45
3
E
Y153
Y153A
4.73 ± 0.03b
19
3
Y153F
5.54 ± 0.03b
2.9
3
Y153S
5.32 ± 0.06b
4.8
3
Data = mean ± SEM.
Significantly different (p < 0.05) than that of WT 5-HT3A receptors.
NR = no response at 100 mM 5-HT.
Table 2
Varenicline Concentration
Response
Parameters Obtained from HEK Cells
loop
mutant
varenicline
pEC50a (M)
varenicline
EC50 (μM)
n
WT
6.38 ± 0.02
0.42
5
A
N128
N128A
5.36 ± 0.05b
4.4
3
N128Q
4.58 ± 0.03b
26
3
B
W183
W183A
NRc
NRc
6
W183Y
4.43 ± 0.04b
38
5
B
L184
L184A
NRc
NRc
6
L184I
5.45 ± 0.04b
3.6
5
C
F226
F226A
4.36 ± 0.12b
44
3
F226Y
5.99 ± 0.05b
1.0
3
C
M228
M228A
4.53 ± 0.04b
30
3
M228C
NRc
NRc
6
C
E229
E229A
5.38 ± 0.18b
4.2
3
E229D
5.98 ± 0.05b
1.1
3
C
Y234
Y234A
NRc
NRc
6
Y234F
5.96 ± 0.04b
1.1
4
Y234S
NRc
NRc
6
D
W90
W90A
NRc
NRc
6
W90Y
5.54 ± 0.03b
2.9
4
D
R92
R92A
6.49 ± 0.06
0.39
4
R92Q
5.19 ± 0.03b
6.4
4
D
Y94
Y94A
6.89 ± 0.02b
0.13
5
Y94F
6.43 ± 0.02
0.37
5
Y94S
6.82 ± 0.04b
0.15
6
S114
S114A
6.16 ± 0.05
0.95
3
S114T
5.36 ± 0.05b
4.3
4
E
Y141
Y141A
NRc
NRc
6
Y141F
6.56 ± 0.07
0.28
4
E
Y143
Y143A
NRc
NRc
6
Y143F
SRd
SRd
6
Y143S
SRd
SRd
6
E
Q151
Q151A
6.22 ± 0.05
0.61
3
Q151N
5.67 ± 0.06b
2.1
4
E
Y153
Y153A
5.03 ± 0.04b
9.4
3
Y153F
5.50 ± 0.06b
3.2
3
Y153S
5.38 ± 0.04b
4.2
3
Data = mean ± SEM.
Significantly different (p < 0.05) than that of WT 5-HT3A receptors.
NR = no response at 100 mM varenicline
SR = responses too small to
obtain
parameters.
Figure 2
HEK cell data. (A) Typical traces from HEK cells transfected with
WT 5-HT3 receptor cDNA, loaded with membrane potential
dye, and stimulated at 20 s with various concentrations of varenicline. F = arbitrary fluorescent units. (B) Concentration–response
curves constructed from FlexStation responses to 5-HT (squares, filled
line) and varenicline (circles, dashed line). Data = mean ± SEM, n = 4.
Varenicline bound to
5-HTBP. (A) Location of varenicline (green)
at the interface between two subunits in the orthosteric 5-HTBP binding
site. (B) Alignment of 5-HTBP, AChBP, and the extracellular domain
of the 5-HT3A receptor subunit showing the approximate
location of the A–E binding loops. The residues mutated in
this study are highlighted in purple, and the residues that differ
between 5-HTBP and AChBP in yellow. (C) The 5-HTBP binding pocket
showing the orientation of varenicline (green) and nearby residues
on the principal (blue) and complementary (magenta) faces. The corresponding
5-HT3 receptor residues are in parentheses. (D) Hydrogen
bonds are present between varenicline and residues Y91, Y193, and
W145 on the principal face and residues I104 and I116 on the complementary
face via a water molecule.HEK cell data. (A) Typical traces from HEK cells transfected with
WT 5-HT3 receptor cDNA, loaded with membrane potential
dye, and stimulated at 20 s with various concentrations of varenicline. F = arbitrary fluorescent units. (B) Concentration–response
curves constructed from FlexStation responses to 5-HT (squares, filled
line) and varenicline (circles, dashed line). Data = mean ± SEM, n = 4.Data = mean ± SEM.Significantly different (p < 0.05) than that of WT 5-HT3A receptors.NR = no response at 100 mM 5-HT.Data = mean ± SEM.Significantly different (p < 0.05) than that of WT 5-HT3A receptors.NR = no response at 100 mM vareniclineSR = responses too small to
obtain
parameters.The functional
data from 5-HT3N128A receptors support
the presence of a hydrogen bond here, as observed in 5-HTBP, because
the EC50 in this mutant is increased 10-fold compared to
that of the WT. However, an even larger change in the varenicline
EC50 was seen with N128Q, which was unexpected as this
residue also has hydrogen bonding ability. We propose that this larger
amino acid is positioned incorrectly and is unable to form an H bond.
Examination of the published 5-HT3 receptor structure[13] reveals that N128 is probably too far from the
center of the binding site to form a hydrogen bond with smaller ligands,
but this structure is in an unbound (apo) state and thus movements
induced by agonist binding could bring N128 within hydrogen bonding
distance. Such movement would be consistent with previous studies
that show this residue is important for gating but not binding.[14]The Trp residue in loop B forms cation-π
interactions with
various agonists in a number of Cys-loop receptors (including 5-HT
and 5-HT3[15]). In 5-HTBP, we
observe such an interaction between this residue and the protonated
benzazepine nitrogen of varenicline. The same interaction in 5-HT3 receptors is supported by a lack of function in 5-HT3W183A receptors and is also consistent with data from varenicline
studies at the α4β2 nACh receptor,[16] although varenicline does not participate in a cation-π
interaction with the TrpB residue in the α7 nACh receptor.[17] Another important loop B residue is L184. Substitution
of this residue to Ile resulted in an ∼10 fold increase in
EC50 with receptors expressed in HEK cells, but no response
was observed when we substituted this residue with Ala. We did, however,
observe responses in oocytes (Tables 3 and 4), which revealed a 46-fold increase in EC50 and a decrease in Rmax/Rmax,5-HT from 0.73 to 0.26 compared to those of
WT receptors (Figure 3). A previous study has
shown that a backbone L184 mutation causes partial loss of function
and converts the partial agonist mCPBG into an antagonist.[18] There is also increasing evidence that loop
B is important for the structure rather than the function of the receptor.[19] We therefore suggest that the role of L184 may
be to define the correct structure of the binding site.
Table 3
Concentration Response Parameters
of 5-HT Obtained from Oocytes
mutant
5-HT pEC50a (M)
5-HT EC50 (μM)
n
5-HT fold
change (EC50,mut/EC50,WT)
WT
5.65 ± 0.03
2.2
5
L184A
4.12 ± 0.03b
76
5
40
W90Y
4.97 ± 0.04b
11
3
5
Y143F
4.78 ± 0.10b
17
4
7.7
Y143S
4.22 ± 0.09b
60
4
27
Y153F
4.66 ± 0.04b
22
4
10
Data = mean ± SEM.
Significantly different (p < 0.05) than that
of WT 5-HT3A receptors.
Table 4
Varenicline Concentration Response
Parameters Obtained from Oocytes
mutant
varenicline
pEC50a (M)
varenicline
EC50 (μM)
varenicline
fold change (EC50,mut/EC50,WT)
varenicline
efficacy (Rmax/Rmax,5-HT)
WT
5.18 ± 0.08
6.6
0.73 ± 0.05
L184A
3.71 ± 0.03b
193
46
0.26 ± 0.03b
W90Y
4.42 ± 0.05b
38
5.8
0.92 ± 0.05b
Y143F
4.01 ± 0.07b
97
15
0.13 ± 0.01b
Y143S
3.85 ± 0.10b
142
22
0.33 ± 0.04b
Y153F
4.55 ± 0.05b
28
4.2
0.76 ± 0.04
Data = mean ±
SEM.
Significantly different
(p < 0.05) than that of WT 5-HT3A receptors.
Figure 3
Concentration
response curves for WT and mutant 5-HT3 receptors expressed
in oocytes. Concentration response curves for
(A) 5-HT3A L184A and (B) 5-HT3A W90Y mutant
receptors (gray lines) compared to WT 5-HT3A receptors
(black lines) for 5-HT (solid lines) and varenicline (dashed lines)
reveal differences in EC50 and Rmax/Rmax,5-HT. Data = mean ±
SEM, n = 3–6.
Concentration
response curves for WT and mutant 5-HT3 receptors expressed
in oocytes. Concentration response curves for
(A) 5-HT3A L184A and (B) 5-HT3A W90Y mutant
receptors (gray lines) compared to WT 5-HT3A receptors
(black lines) for 5-HT (solid lines) and varenicline (dashed lines)
reveal differences in EC50 and Rmax/Rmax,5-HT. Data = mean ±
SEM, n = 3–6.Data = mean ± SEM.Significantly different (p < 0.05) than that
of WT 5-HT3A receptors.Data = mean ±
SEM.Significantly different
(p < 0.05) than that of WT 5-HT3A receptors.The data show that the aromatic
rings of the loop C residues F226
and Y234 are important. Conservation of aromaticity in the 5-HT3F226Y receptor had little effect on the EC50, whereas
a non-aromatic residue ablated agonist-gated currents, suggesting
a critical hydrophobic interaction. The important role of Y234 has
been shown in many studies, and the data were similar here. Both an
aromatic and a hydroxyl group play a role: removal of the former in
5-HT3Y234A receptors ablated function, and removal of the
latter in 5-HT3Y234F receptors increased the EC50. In 5-HTBP, the equivalent residue forms a hydrogen bond with varenicline,
and we propose a similar role here. In the α7 nACh receptor,
however, the residue equivalent to Y234 (TyrC2) is not important for
binding varenicline (although it is involved in the binding of ACh
and epibatidine).[17,20] In the previously reported varenicline-bound
AChBP structures (4AFG[11] and 4AFT[12]), varenicline is further away from this residue;
a H bond is only predicted in one of the five binding sites for Ac-AChBP (4AFT) and may occur via a bridging water molecule
in one of the Capitella telata–AChBP sites
(Figure S2, Supporting Information). Thus,
it seems that varenicline may have different interactions with different
receptors.
Varenicline Interactions at the Complementary
Binding Face
The structure revealed hydrogen bonds via a
water molecule to the
backbone OH of I104 and NH of I116 (loop E), and Y53 forms part of
the aromatic box that surrounds varenicline. To probe interactions
with these and other residues in the 5-HT3 receptor, we
mutated W90, R92, and Y94 in loop D, S114 (not in a binding loop),
and Y141, Y143, Q151, and Y153 in loop E, all of which are within
5 Å of varenicline.Of the loop D residues, W90 (equivalent
to 5-HTBP Y53) appears to be the most important for functional responses
to 5-HT and varenicline. W90 has been previously investigated in mouse
5-HT3 receptors, and its aromatic group is essential for
binding.[21] Here, we show that substitution
with Tyr, which has only a small effect on EC50, significantly
increases the efficacy of varenicline, making it a full agonist (Figure 3, Table 4). In the α4β2
nACh receptor, mutation of the equivalent Trp residue also increased
efficacy, in this case from 15 to 125%.[11] A different effect was observed in the α7 nACh receptor, where
the equivalent mutation causes the EC50 of varenicline
to increase much more than it does for ACh.[17] These agonist-specific effects at multiple receptors indicate that
this residue may be an important determinant of affinity and efficacy
across the superfamily, even though it may interact differently with
different ligands.Substitution of the loop E residues Y141,
Y143, and Y153 causes
large changes in EC50 or even ablates function. Of these
residues, Y143 appears to play the biggest role as mutating this residue
in the 5-HT3 receptor has large effects on both the EC50 and the Rmax of varenicline,
which is only 13% in Y143F mutant receptors. Previously, we suggested
that a hydrogen bond formed by this residue was essential for receptor
gating.[22] With the benefit of the recent
high-resolution structure of the 5-HT3 receptor,[13] we can see that the Y143 hydroxyl does indeed
form hydrogen bonds to D189 and T186 backbone atoms across the binding
interface (Figure 4). Because both of these
residues have been previously identified as important for receptor
function,[23,24] it seems likely that a network of hydrogen
bonds in this region are critical for receptor gating transitions.
This network may also involve Y141, which forms hydrogen bonds with
the backbone of V122, also across the interface, although the hydroxyl
group of this residue appears to be less critical.[22]
Figure 4
The 5-HT3 receptor loop E region. Structural data from
the mouse 5-HT3A receptor structure (PDB: 4PIR) reveal a network
of hydrogen bonds involving the loop E aromatic residues Y141, Y143,
and Y153. Functional data show the importance of these residues for
proper functioning of the receptor.
The 5-HT3 receptor loop E region. Structural data from
the mouse 5-HT3A receptor structure (PDB: 4PIR) reveal a network
of hydrogen bonds involving the loop E aromatic residues Y141, Y143,
and Y153. Functional data show the importance of these residues for
proper functioning of the receptor.The hydroxyl group of Y153 is also important; its removal
through
the Y153F mutation caused 4–10 fold changes in EC50. The structure of the 5-HT3 receptor[13] shows this group forming hydrogen bond interactions with
other residues (Q151, R92, and Y94; Figure 4) on the complementary face. The residue equivalent to Y153 has been
extensively studied in AChBP and in nACh receptors. In AChBP, many
structures with bound ligands show direct or water-mediated hydrogen
bonds to the backbone NH of this residue, including the varenicline-bound
Ct-AChBP structure[11] (Figure S2B, Supporting Information), and experimental evidence
for such an interaction with the backbone NH of the equivalent residue
in α4β2 nACh receptors has been demonstrated using unnatural
amino acid mutagenesis.[25] In the α7
nACh receptor, the equivalent mutation shows that the EC50 for varenicline increases greater than 10-fold compared to that
of ACh.[17] Thus, different interactions
with this residue in different receptors likely contribute to drug
selectivity and the observed differences in efficacy.
Possible Explanations
for the Partial Agonist Behavior of Varenicline
There is
substantial evidence that agonists and antagonists induce
different conformational changes in the region of the C-loop with
agonists causing C-loop closure around the bound ligand.[26,27] There is also increasing evidence that partial agonists are unable
to achieve the same extent of C-loop closure seen with full agonists,[28] although there do appear to be some exceptions.[12,26] In the varenicline-bound structure presented here, there appears
to be a small increase in the C188–W145 distance compared to
that of the 5-HT bound structure. The distance between the γ-sulfur
of C188 and the carbonyl oxygen of W145 was found to be 7.34 Å
(an average from 5 binding sites) compared to an average distance
of 6.89 Å for the 10 binding sites in the 5-HT-bound 5-HTBP structure
(PDB: 2YMD),
indicating that the C-loop in 5-HTBP contracts more fully over 5-HT
than varenicline (although we cannot show statistical significance
here due to errors associated with the resolution and R-factor). A similarly increased distance has been observed for the
varenicline-bound relative to the ACh-bound AChBP structure.[11] This intermediate level of closure of the C-loop
could provide an explanation for the partial agonism achieved by this
drug at the 5-HT3 receptor. It may be, however, that the
partial agonism is due to differences in interactions with the complementary
face; Rohde et al.[29] did not observe large
differences in the C188–W145 distances of a range of structures
of partial agonists with varying efficacies, but did report a correlation
between the strength of interactions with residues on the complementary
face and the degree of efficacy. Thus, it may be that the difference
between water-mediated and direct hydrogen bonds to complementary
face residues with varenicline and 5-HT, respectively, results in
the partial agonist activity of the former.
Conclusions
In conclusion, we show here a high resolution structure of 5-HTBP
in complex with varenicline. Substitution and functional characterization
of 5-HT3 receptor residues that are equivalent to those
observed in the 5-HTBP binding site suggest that the orientation of
varenicline is similar in 5-HT3 receptors, where it is
a reasonably potent albeit a partial agonist. Differences in the extent
of C-loop closure and/or differences in interactions with the complementary
face residues could explain this partial agonist activity.
Methods
Protein Expression and
Crystallization
5-HTBP was expressed
and purified as previously described.[10] A stock solution of varenicline tartrate (Sigma) was made in water
at a concentration of 500 mM and mixed with 6 mg/mL 5-HTBP to yield
a final varenicline concentration of 5 mM. Cryoprotection of the crystals
was achieved by equilibration of the mother liquor in 5% increments
of glycerol to a final concentration of 30% glycerol, and crystals
were immersed in liquid nitrogen prior to X-ray diffraction data collection.
The structure was determined by molecular replacement using the published
structure of 5-HTBP as the template (PDB: 2YMD). After placing the ligand into the electron
density map, the model of the complex was manually rebuilt and refined
through iterative cycles in Coot and Phenix. The final model has an Rwork value of 18.7% and Rfree value of 24.4%. Model validation was carried out in Molprobity,
and the model has a score of 1.75, which is in the 97th percentile
for this resolution range. Figures were prepared with Pymol.
Mutagenesis
All mutant receptors were created using
QuikChange mutagenesis (Agilent). Residue numbering was altered to
be consistent with mouse 5-HT3 receptor numbering.
Cell Culture
Human embryonic kidney (HEK) 293 cells
were maintained on 90 mm tissue culture plates at 37 °C and 7%
CO2 in a humidified atmosphere. They were cultured in Dulbecco’s
Modified Eagle’s Medium/Nutrient Mix F12 (1:1) with GlutaMAX
I media (Life Technologies, Paisley, UK) containing 10% HyClone fetal
calf serum (GE Healthcare). For FlexStation studies, cells were transfected
using polyethylenimine (PEI; Polysciences). PEI (30 μL at 1
mg/mL), cDNA (5 μL at 1 mg/mL; subcloned into pcDNA3.1), and
DMEM (1 mL) were incubated for 10 min at room temperature, added dropwise
to a 70–90% confluent plate, and incubated for 2 days. Cells
were then transferred to poly-l-lysine (Cultrex)-coated 96-well
plates and allowed to adhere overnight before use.
FlexStation
Analysis
The methods were used essentially
as described previously.[30] In brief, fluorescent
membrane potential dye (Membrane Potential Blue kit, Molecular Devices)
was diluted in flex buffer (10 mM HEPES, 115 mM NaCl, 1 mM KCl, 1
mM CaCl2, 1 mM MgCl2, and 10 mM glucose, pH
7.4), and 100 μL was added to each well of transfected cells.
The cells were incubated at 37 °C for 45 min, and then fluorescence
was measured in a FlexStation 3 microplate reader (Molecular Devices)
at 2 s intervals for 200 s. Varenicline tartrate (Tocris) or 5-HT
(Sigma) was added to each well after 20 s. The change in fluorescence
(ΔF) was defined as Fmax (peak fluorescence) – Fmin (baseline fluorescence). Data were normalized to the maximum ΔF with the highest concentration of 5-HT. Concentration–response
data were fitted to the four-parameter logistic equation using Prism
(GraphPad Software Inc., San Diego, CA).
Oocyte Maintenance and
RNA Preparation
Xenopus
laevis oocytes were purchased from Ecocyte Bioscience (Austin,
TX) and stored in Barth’s solution (88 mM NaCl, 2.4 mM NaHCO3, 1 mM KCl, 0.33 mM Ca(NO3)·4H2O, 0.41 mM CaCl2·2H2O, 0.82 mM MgSO4·7H2O, and 5 mM Tris/HCl, pH 7.5) containing
2.5 mM sodium pyruvate, 50 mM gentamicin, and 0.7 mM theophylline.
RNA was transcribed in vitro from Sph I-linearized plasmid cDNA template
using the mMessage mMachine T7 transcription kit (Ambion, Austin,
TX). Oocytes were injected with 5–20 ng of cRNA, and currents
were recorded 1–2 days post injection.
Electrophysiology
Oocytes were clamped at −60
mV using a Roboocyte (Multi Channel Systems), an automated two-electrode
voltage clamp workstation. Concentration–response data for
each oocyte were normalized to the maximum current for that oocyte.
The mean and SEM for a series of oocytes were plotted against agonist
concentration and iteratively fitted to the four-parameter logistic
equation using Prism. Values are presented as mean ± SEM.
Authors: Darren L Beene; Gabriel S Brandt; Wenge Zhong; Niki M Zacharias; Henry A Lester; Dennis A Dougherty Journal: Biochemistry Date: 2002-08-13 Impact factor: 3.162
Authors: Marijke Brams; Anshul Pandya; Dmitry Kuzmin; René van Elk; Liz Krijnen; Jerrel L Yakel; Victor Tsetlin; August B Smit; Chris Ulens Journal: PLoS Biol Date: 2011-03-29 Impact factor: 8.029
Authors: Divya Kesters; Andrew J Thompson; Marijke Brams; René van Elk; Radovan Spurny; Matthis Geitmann; Jose M Villalgordo; Albert Guskov; U Helena Danielson; Sarah C R Lummis; August B Smit; Chris Ulens Journal: EMBO Rep Date: 2012-11-30 Impact factor: 8.807
Authors: Somnath Mukherjee; Satchal K Erramilli; Mark Ammirati; Frances J D Alvarez; Kimberly F Fennell; Michael D Purdy; Blazej M Skrobek; Katarzyna Radziwon; John Coukos; Yanyong Kang; Przemysław Dutka; Xiang Gao; Xiayang Qiu; Mark Yeager; H Eric Xu; Seungil Han; Anthony A Kossiakoff Journal: Nat Commun Date: 2020-03-27 Impact factor: 14.919