| Literature DB >> 25644986 |
Abstract
BACKGROUND: Brucellosis is a common zoonotic disease and remains a major burden in both human and domesticated animal populations worldwide. Few geographic studies of human Brucellosis have been conducted, especially in China. Inner Mongolia of China is considered an appropriate area for the study of human Brucellosis due to its provision of a suitable environment for animals most responsible for human Brucellosis outbreaks.Entities:
Mesh:
Year: 2015 PMID: 25644986 PMCID: PMC4319220 DOI: 10.1186/s12879-015-0763-9
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.090
Figure 1Inner Mongolia, China.
Predictor variables (data layers) in the study
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| Evi max | Maximum EVI | EVI = 2.5 × (NIR-RED)/(NIR + 6.0 × RED–7.5 × BLUE + 1.0) |
| Evi mean | Mean EVI | |
| Evi min | Minimum EVI | |
| lst max | Maximum LST (°C) | |
| lst mean | Mean LST (°C) | split-window method |
| lst min | Minimum LST (°C) | |
| Mir max | Maximum MIR | |
| Mir mean | Mean MIR | MODIS band 7 |
| Mir min | Minimum MIR | |
| Prec max | Maximum precipitation (mm) | |
| Prec mean | Mean precipitation (mm) | |
| Prec min | Minimum precipitation (mm) | |
| Alt | Altitude (m) | |
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| Bio 1 | Annual mean temperature (°C) | |
| Bio 2 | Mean diurnal range(°C) | max temp - min temp |
| Bio 3 | Isothermality | (bio2 / bio7) × 100 |
| Bio 4 | Temperature seasonality | (std. dev. / mean) × 100 |
| Bio 5 | Max temperature of warmest month (°C) | |
| Bio 6 | Min temperature of coldest month (°C) | |
| Bio 7 | Temperature annual range (°C) | bio5 - bio6 |
| Bio 8 | Mean temperature of wettest quarter (°C) | |
| Bio 9 | Mean temperature of driest quarter (°C) | |
| Bio 10 | Mean temperature of warmest quarter (°C) | |
| Bio 11 | Mean temperature of coldest quarter (°C) | |
| Bio 12 | Annual precipitation (mm) | |
| Bio 13 | Precipitation of wettest month (mm) | |
| Bio 14 | Precipitation of driest month (mm) | |
| Bio 15 | Precipitation seasonality | (std. dev. / mean) × 100 |
| Bio 16 | Precipitation of wettest quarter (mm) | |
| Bio 17 | Precipitation of driest quarter (mm) | |
| Bio 18 | Precipitation of warmest quarter (mm) | |
| Bio 19 | Precipitation of coldest quarter (mm) | |
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| Access | Travel time to the nearest major settlement of population size 50,000 or more (minutes) | |
| Pop | Population density (person/km2) in 2000 | |
| Cattle05 | Cattle density (heads/km2) in 2005 | |
| Rumi05 | Small ruminants density (heads/km2) in 2005 | |
| Cattle10 | Cattle density (heads/km2) in 2010 | |
| Goat10 | Goats density (heads /km2) in 2010 | |
| Sheep10 | Sheep density (heads/km2) in 2010 | |
MIR: middle infrared radiation; LST: land surface temperature; EVI: enhanced vegetation index; NIR: near infrared reflectance.
Figure 2Decadal human Brucellosis cases (persons) at the municipal level during 1951–2010.
Descriptive statistics of raw and natural log-transformed incidence rates of Brucellosis occurrences in humans by county during 2006-2010
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| 2006 | 89 | 76.149 | 1.065 | 4.721 | 0.500 |
| 2007 | 89 | 80.963 | 1.224 | 4.600 | 0.488 |
| 2008 | 89 | 110.497 | 1.946 | 4.251 | 0.451 |
| 2009 | 89 | 158.035 | 3.135 | 3.059 | 0.324 |
| 2010 | 89 | 128.852 | 3.313 | 2.894 | 0.307 |
Results (equal variances assumed) of -test for the difference of incidence rates of human Brucellosis occurrences between each subsequent and preceding year during 2006-2010
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| 2007 v.s. 2006 | 0.113 | 0.737 | −0.228 | 176 | 0.820 | −0.159 | 0.699 | −1.538 | 1.220 |
| 2008 v.s. 2007 | 0.851 | 0.358 | −1.088 | 176 | 0.278 | −0.722 | 0.664 | −2.032 | 0.588 |
| 2009 v.s. 2008 | 5.090 | 0.025 | −2.142 | 176 | 0.034 | −1.189 | 0.555 | −2.285 | −0.094 |
| 2010 v.s. 2009 | 0.399 | 0.528 | −0.398 | 176 | 0.691 | −0.178 | 0.446 | −1.058 | 0.703 |
| 2010 v.s. 2006 | 17.594 | 0.000 | −3.830 | 176 | 0.000 | −2.248 | 0.587 | −3.406 | −1.090 |
Figure 3County level spatial distribution of aggregated human cases (persons) and incidence rates (persons per 100,000 population) over 2006–2010.
Figure 4Raw and spatially smoothed incidence rates of human Brucellosis cases.
Figure 5Spatial clustering of human Brucellosis cases and incidence rates.
Analysis of variable contributions and model assessment
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| Sheep10 | 23.4 | 10.5 | 22 | 8.1 |
| Rumi05 | 20.2 | 9.8 | 22.6 | 4.8 |
| Alt | 15.3 | 25.2 | 13.8 | 32.9 |
| Bio 15 | 14.7 | 8.7 | 11.8 | 6.8 |
| Bio 7 | 9.5 | 3.1 | 12.1 | 9.5 |
| Bio 3 | 7.3 | 6.0 | 6.2 | 1.9 |
| Access | 5.9 | 1.4 | 6.1 | 0.7 |
| Bio 10 | 1.3 | 6.6 | 2.4 | 5.9 |
| Pop | 0.9 | 12.5 | 1.0 | 9.6 |
| Bio 2 | 0.7 | 3.4 | 0.4 | 4.1 |
| Cattle05 | 0.5 | 2.3 | 0 | 1.0 |
| Evi mean | 0.2 | 2.8 | 0.2 | 3.6 |
| Cattle10 | 0.2 | 1.2 | 0.2 | 1.3 |
| Prec mean | 0.1 | 5.3 | 0.5 | 6.8 |
| lst mean | 0.1 | 0.6 | 0.1 | 1.8 |
| Goat10 | 0 | 0.3 | 0.5 | 0.8 |
| Mir mean | 0 | 0.5 | 0 | 0.2 |
| ENM_1 | ENM_2 | |||
| Training gain | 2.634 | 2.614 | ||
| Test gain | 2.667 | 1.252 | ||
| Training AUC | 0.976 | 0.975 | ||
| Test AUC | 0.973 | 0.936 | ||
Figure 6Jackknife analysis results. (a) The Jackknife of regularized training gain test which predictor (variable) contributes most to the model (b) The Jackknife of test gain uses the test samples (not used in the model) to measure how each predictor (variable) contributes to the average likelihood of presence locality (c) The Jackknife of AUC assesses differences in significance to show that the model performs better than random based on each variable.
Figure 7Probability of presence of human Brucellosis in nine Chinese provinces and the country of Mongolia.
Counties (cities, districts or banners) with different extents of probability for human Brucellosis
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| >0.5 – 0.57 | West Ujimqin Banner, Plain and Bordered White Banner, Duolun County, Xulun Hoh Banner |
| >0.4 – 0.5 | Bordered Yellow Banner, Xilinhot City, Sonid Right Banner, Abag Banner, Darhan Muminggan United Banner, Tumed Left Banner, Siziwang Banner, Hohhot City, Tumed Right Banner, East Ujimqin Banner, Hexigten Banner, Jungar Banner, Baiyun Mining District |
| >0.3 – 0.4 | Urat Middle Banner, Horinger County, Linxi County, Chahar Right Back Banner, Sonid Left Banner, Urat Front Banner, Guyang County, Shangdu County, Dalad Banner, Baotou City |
| >0.2 – 0.3 | Togtoh County, Qingshuihe County, Huade County, Chahar Right Middle Banner, Harqin Banner, Baarin Right Banner, Xinghe County, Donghe District, Wuchuan County, Hanggin Banner |
| >0.1 – 0.2 | Liangcheng County, Zhuozi County, Taibus Banner, Otog Banner, Chifeng City, Chahar Right Front Banner, Ongniud Banner, Wuyuan County, Baarin Left Banner, Ejin Horo Banner, Dengkou County, Linhe District |
| >0.01 – 0.1 | Hanggin Rear Banner, Uxin Banner, Horqin Right Front Banner, Jining District, Fengzhen City, Jarud Banner, Horqin Right Middle Banner, Ningcheng County, Aohan Banner, Erenhot City, Holingol City, Ar Khorchin Banner, Otog Front Banner, Tuquan County, New Barag Left Banner, Wuhai City, New Barag Right Banner, Urat Rear Banner, Ulan Hot City, Evenk Autonomous Banner |
Variables of total numbers (persons or heads) derived from original variables of densities (persons/km or heads/km )
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| Pop | pop den | pop tot | Total number of population in 2005 |
| Cattle05 | ca05 den | ca05 tot | Total number of cattle in 2005 |
| Rumi05 | ru05 den | ru05 tot | Total number of small ruminants in 2005 |
| Cattle10 | ca10 den | ca10 tot | Total number of cattle in 2010 |
| Goat10 | go10 den | go10 tot | Total number of goats in 2010 |
| Sheep10 | sh10 den | sh10 tot | Total number of sheep in 2010 |
Significant independent variables for the incidence rates of human Brucellosis cases in different years ( < 0.05)
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| Bio 3 | −0.436 | - | - | - | - | - |
| lst mean | - | −0.766 | −0.767 | −0.730 | −0.965 | −0.990 |
| Mir mean | 0.227 | 0.752 | 0.748 | 0.742 | 0.877 | 0.905 |
| Access | - | - | - | - | −0.235 | −0.220 |
| Alt | 0.339 | - | - | - | - | - |
| ca05 tot | 0.246 | - | - | - | - | - |
| sh10 tot | 0.194 | 0.290 | 0.314 | 0.302 | 0.366 | 0.305 |
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| R2 | 0.317 | 0.357 | 0.377 | 0.356 | 0.466 | 0.425 |
| Adjusted R2 | 0.275 | 0.334 | 0.355 | 0.333 | 0.441 | 0.397 |