Literature DB >> 25643615

Transcription factor-mediated reprogramming: epigenetics and therapeutic potential.

Jaber Firas1, Xiaodong Liu1, Sue Mei Lim1, Jose M Polo1.   

Abstract

Cellular reprogramming refers to the conversion of one cell type into another by altering its epigenetic marks. This can be achieved by three different methods: somatic cell nuclear transfer, cell fusion and transcription factor (TF)-mediated reprogramming. TF-mediated reprogramming can occur through several means, either reverting backwards to a pluripotent state before redifferentiating to a new cell type (otherwise known as induced pluripotency), by transdifferentiating directly into a new cell type (bypassing the intermediate pluripotent stage), or, by using the induced pluripotency pathway without reaching the pluripotent state. The possibility of reprogramming any cell type of interest not only sheds new insights on cellular plasticity, but also provides a novel use of this technology across several platforms, most notably in cellular replacement therapies, disease modelling and drug screening. This review will focus on the different ways of implementing TF-mediated reprogramming, their associated epigenetic changes and its therapeutic potential.

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Year:  2015        PMID: 25643615     DOI: 10.1038/icb.2015.5

Source DB:  PubMed          Journal:  Immunol Cell Biol        ISSN: 0818-9641            Impact factor:   5.126


  56 in total

1.  Directly reprogrammed fibroblasts show global epigenetic remodeling and widespread tissue contribution.

Authors:  Nimet Maherali; Rupa Sridharan; Wei Xie; Jochen Utikal; Sarah Eminli; Katrin Arnold; Matthias Stadtfeld; Robin Yachechko; Jason Tchieu; Rudolf Jaenisch; Kathrin Plath; Konrad Hochedlinger
Journal:  Cell Stem Cell       Date:  2007-06-07       Impact factor: 24.633

2.  Tet and TDG mediate DNA demethylation essential for mesenchymal-to-epithelial transition in somatic cell reprogramming.

Authors:  Xiao Hu; Lei Zhang; Shi-Qing Mao; Zheng Li; Jiekai Chen; Run-Rui Zhang; Hai-Ping Wu; Juan Gao; Fan Guo; Wei Liu; Gui-Fang Xu; Hai-Qiang Dai; Yujiang Geno Shi; Xianlong Li; Boqiang Hu; Fuchou Tang; Duanqing Pei; Guo-Liang Xu
Journal:  Cell Stem Cell       Date:  2014-02-13       Impact factor: 24.633

3.  Immunogenicity of induced pluripotent stem cells.

Authors:  Tongbiao Zhao; Zhen-Ning Zhang; Zhili Rong; Yang Xu
Journal:  Nature       Date:  2011-05-13       Impact factor: 49.962

4.  Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network.

Authors:  Yen-Sin Ang; Su-Yi Tsai; Dung-Fang Lee; Jonathan Monk; Jie Su; Kajan Ratnakumar; Junjun Ding; Yongchao Ge; Henia Darr; Betty Chang; Jianlong Wang; Michael Rendl; Emily Bernstein; Christoph Schaniel; Ihor R Lemischka
Journal:  Cell       Date:  2011-04-07       Impact factor: 41.582

5.  Induced pluripotent stem cells generated without viral integration.

Authors:  Matthias Stadtfeld; Masaki Nagaya; Jochen Utikal; Gordon Weir; Konrad Hochedlinger
Journal:  Science       Date:  2008-09-25       Impact factor: 47.728

6.  Jmjd3 inhibits reprogramming by upregulating expression of INK4a/Arf and targeting PHF20 for ubiquitination.

Authors:  Wei Zhao; Qingtian Li; Stephen Ayers; Yifeng Gu; Zhong Shi; Qingyuan Zhu; Yidong Chen; Helen Y Wang; Rong-Fu Wang
Journal:  Cell       Date:  2013-02-28       Impact factor: 41.582

7.  In vivo direct reprogramming of reactive glial cells into functional neurons after brain injury and in an Alzheimer's disease model.

Authors:  Ziyuan Guo; Lei Zhang; Zheng Wu; Yuchen Chen; Fan Wang; Gong Chen
Journal:  Cell Stem Cell       Date:  2013-12-19       Impact factor: 24.633

8.  Derivation of naive human embryonic stem cells.

Authors:  Carol B Ware; Angelique M Nelson; Brigham Mecham; Jennifer Hesson; Wenyu Zhou; Erica C Jonlin; Antonio J Jimenez-Caliani; Xinxian Deng; Christopher Cavanaugh; Savannah Cook; Paul J Tesar; Jeffrey Okada; Lilyana Margaretha; Henrik Sperber; Michael Choi; C Anthony Blau; Piper M Treuting; R David Hawkins; Vincenzo Cirulli; Hannele Ruohola-Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-12       Impact factor: 11.205

9.  Citrullination regulates pluripotency and histone H1 binding to chromatin.

Authors:  Maria A Christophorou; Gonçalo Castelo-Branco; Richard P Halley-Stott; Clara Slade Oliveira; Remco Loos; Aliaksandra Radzisheuskaya; Kerri A Mowen; Paul Bertone; José C R Silva; Magdalena Zernicka-Goetz; Michael L Nielsen; John B Gurdon; Tony Kouzarides
Journal:  Nature       Date:  2014-01-26       Impact factor: 49.962

10.  Systematic identification of culture conditions for induction and maintenance of naive human pluripotency.

Authors:  Thorold W Theunissen; Benjamin E Powell; Haoyi Wang; Maya Mitalipova; Dina A Faddah; Jessica Reddy; Zi Peng Fan; Dorothea Maetzel; Kibibi Ganz; Linyu Shi; Tenzin Lungjangwa; Sumeth Imsoonthornruksa; Yonatan Stelzer; Sudharshan Rangarajan; Ana D'Alessio; Jianming Zhang; Qing Gao; Meelad M Dawlaty; Richard A Young; Nathanael S Gray; Rudolf Jaenisch
Journal:  Cell Stem Cell       Date:  2014-07-24       Impact factor: 24.633

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  6 in total

1.  The epigenetic mechanisms that underlie health and disease.

Authors:  Rhys S Allan
Journal:  Immunol Cell Biol       Date:  2015-03       Impact factor: 5.126

2.  Combination of Chemical and Neurotrophin Stimulation Modulates Neurotransmitter Receptor Expression and Activity in Transdifferentiating Human Adipose Stromal Cells.

Authors:  Arthur A Nery; Ricardo L Pereira; Vinicius Bassaneze; Isis C Nascimento; Lauren S Sherman; Pranela Rameshwar; Claudiana Lameu; Henning Ulrich
Journal:  Stem Cell Rev Rep       Date:  2019-12       Impact factor: 5.739

3.  A predictive computational framework for direct reprogramming between human cell types.

Authors:  Owen J L Rackham; Jaber Firas; Hai Fang; Matt E Oates; Melissa L Holmes; Anja S Knaupp; Harukazu Suzuki; Christian M Nefzger; Carsten O Daub; Jay W Shin; Enrico Petretto; Alistair R R Forrest; Yoshihide Hayashizaki; Jose M Polo; Julian Gough
Journal:  Nat Genet       Date:  2016-01-18       Impact factor: 38.330

Review 4.  Computational methods for direct cell conversion.

Authors:  Uma S Kamaraj; Julian Gough; Jose M Polo; Enrico Petretto; Owen J L Rackham
Journal:  Cell Cycle       Date:  2016-10-13       Impact factor: 4.534

5.  Knockdown of NEAT1 induces tolerogenic phenotype in dendritic cells by inhibiting activation of NLRP3 inflammasome.

Authors:  Maomao Zhang; Yang Zheng; Yong Sun; Shuang Li; Liangqi Chen; Xiangyuan Jin; Xinyu Hou; Xianglan Liu; Qi Chen; Jing Li; Mingyang Liu; Xianghui Zheng; Yongxiang Zhang; Jian Wu; Bo Yu
Journal:  Theranostics       Date:  2019-05-24       Impact factor: 11.556

6.  Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo.

Authors:  Danielle R Little; Anne M Lynch; Yun Yan; Haruhiko Akiyama; Shioko Kimura; Jichao Chen
Journal:  Nat Commun       Date:  2021-05-04       Impact factor: 14.919

  6 in total

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