Literature DB >> 25642138

False Discovery Control in Large-Scale Spatial Multiple Testing.

Wenguang Sun1, Brian J Reich2, T Tony Cai3, Michele Guindani4, Armin Schwartzman5.   

Abstract

This article develops a unified theoretical and computational framework for false discovery control in multiple testing of spatial signals. We consider both point-wise and cluster-wise spatial analyses, and derive oracle procedures which optimally control the false discovery rate, false discovery exceedance and false cluster rate, respectively. A data-driven finite approximation strategy is developed to mimic the oracle procedures on a continuous spatial domain. Our multiple testing procedures are asymptotically valid and can be effectively implemented using Bayesian computational algorithms for analysis of large spatial data sets. Numerical results show that the proposed procedures lead to more accurate error control and better power performance than conventional methods. We demonstrate our methods for analyzing the time trends in tropospheric ozone in eastern US.

Entities:  

Keywords:  Compound decision theory; false cluster rate; false discovery exceedance; false discovery rate; large-scale multiple testing; spatial dependency

Year:  2015        PMID: 25642138      PMCID: PMC4310249          DOI: 10.1111/rssb.12064

Source DB:  PubMed          Journal:  J R Stat Soc Series B Stat Methodol        ISSN: 1369-7412            Impact factor:   4.488


  14 in total

1.  Meta-analysis based on control of false discovery rate: combining yeast ChIP-chip datasets.

Authors:  Saumyadipta Pyne; Bruce Futcher; Steve Skiena
Journal:  Bioinformatics       Date:  2006-08-14       Impact factor: 6.937

2.  A Markov random field model for network-based analysis of genomic data.

Authors:  Zhi Wei; Hongzhe Li
Journal:  Bioinformatics       Date:  2007-05-05       Impact factor: 6.937

3.  Screening for partial conjunction hypotheses.

Authors:  Yoav Benjamini; Ruth Heller
Journal:  Biometrics       Date:  2008-02-06       Impact factor: 2.571

4.  Multiple testing in genome-wide association studies via hidden Markov models.

Authors:  Zhi Wei; Wenguang Sun; Kai Wang; Hakon Hakonarson
Journal:  Bioinformatics       Date:  2009-08-04       Impact factor: 6.937

5.  Gene and pathway-based second-wave analysis of genome-wide association studies.

Authors:  Gang Peng; Li Luo; Hoicheong Siu; Yun Zhu; Pengfei Hu; Shengjun Hong; Jinying Zhao; Xiaodong Zhou; John D Reveille; Li Jin; Christopher I Amos; Momiao Xiong
Journal:  Eur J Hum Genet       Date:  2010-01       Impact factor: 4.246

6.  The effect of correlation in false discovery rate estimation.

Authors:  Armin Schwartzman; Xihong Lin
Journal:  Biometrika       Date:  2011-03       Impact factor: 2.445

7.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

8.  Comment on "Correlated z-values and the accuracy of large-scale statistical estimates" by Bradley Efron.

Authors:  Armin Schwartzman
Journal:  J Am Stat Assoc       Date:  2010-09-01       Impact factor: 5.033

9.  A Bayesian Discovery Procedure.

Authors:  Michele Guindani; Peter Müller; Song Zhang
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2009-11-01       Impact factor: 4.488

10.  Incorporating biological pathways via a Markov random field model in genome-wide association studies.

Authors:  Min Chen; Judy Cho; Hongyu Zhao
Journal:  PLoS Genet       Date:  2011-04-07       Impact factor: 5.917

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  13 in total

1.  Generalized species sampling priors with latent Beta reinforcements.

Authors:  Edoardo M Airoldi; Thiago Costa; Federico Bassetti; Fabrizio Leisen; Michele Guindani
Journal:  J Am Stat Assoc       Date:  2014-12-01       Impact factor: 5.033

2.  Fully Bayesian spectral methods for imaging data.

Authors:  Brian J Reich; Joseph Guinness; Simon N Vandekar; Russell T Shinohara; Ana-Maria Staicu
Journal:  Biometrics       Date:  2017-09-28       Impact factor: 2.571

3.  Spatial Signal Detection Using Continuous Shrinkage Priors.

Authors:  An-Ting Jhuang; Montserrat Fuentes; Jacob L Jones; Giovanni Esteves; Chris M Fancher; Marschall Furman; Brian J Reich
Journal:  Technometrics       Date:  2019-03-22

4.  Assessing NARCCAP climate model effects using spatial confidence regions.

Authors:  Joshua P French; Seth McGinnis; Armin Schwartzman
Journal:  Adv Stat Climatol Meteorol Oceanogr       Date:  2017-07-14

5.  Simultaneous Covariance Inference for Multimodal Integrative Analysis.

Authors:  Yin Xia; Lexin Li; Samuel N Lockhart; William J Jagust
Journal:  J Am Stat Assoc       Date:  2019-06-28       Impact factor: 5.033

6.  Weighted False Discovery Rate Control in Large-Scale Multiple Testing.

Authors:  Pallavi Basu; T Tony Cai; Kiranmoy Das; Wenguang Sun
Journal:  J Am Stat Assoc       Date:  2018-06-12       Impact factor: 5.033

7.  Generalized Linear Mixed Models with Gaussian Mixture Random Effects: Inference and Application.

Authors:  Lanfeng Pan; Yehua Li; Kevin He; Yanming Li; Yi Li
Journal:  J Multivar Anal       Date:  2019-10-15       Impact factor: 1.473

8.  Bayesian Models for fMRI Data Analysis.

Authors:  Linlin Zhang; Michele Guindani; Marina Vannucci
Journal:  Wiley Interdiscip Rev Comput Stat       Date:  2015 Jan-Feb

9.  Bayesian Hidden Markov Models for Dependent Large-Scale Multiple Testing.

Authors:  Xia Wang; Ali Shojaie; Jian Zou
Journal:  Comput Stat Data Anal       Date:  2019-01-29       Impact factor: 1.681

10.  MULTIPLE TESTING OF LOCAL MAXIMA FOR DETECTION OF PEAKS IN RANDOM FIELDS.

Authors:  Dan Cheng; Armin Schwartzman
Journal:  Ann Stat       Date:  2019-05-16       Impact factor: 4.028

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