Literature DB >> 25639453

An approach to NMR assignment of intrinsically disordered proteins.

Nishit Goradia1, Christoph Wiedemann, Christian Herbst, Matthias Görlach, Stefan H Heinemann, Oliver Ohlenschläger, Ramadurai Ramachandran.   

Abstract

An efficient approach to NMR assignments in intrinsically disordered proteins is presented, making use of the good dispersion of cross peaks observed in [(15) N,(13) C']- and [(13) C',(1) H(N) ]-correlation spectra. The method involves the simultaneous collection of {3D (H)NCO(CAN)H and 3D (HACA)CON(CA)HA} spectra for backbone assignments via sequential H(N) and H(α) correlations and {3D (H)NCO(CACS)HS and 3D (HS)CS(CA)CO(N)H} spectra for side-chain (1) H and (13) C assignments, employing sequential (1) H data acquisitions with direct detection of both the amide and aliphatic protons. The efficacy of the approach for obtaining resonance assignments with complete backbone and side-chain chemical shifts is demonstrated experimentally for the 61-residue [(13) C,(15) N]-labelled peptide of a voltage-gated potassium channel protein of the Kv1.4 channel subunit. The general applicability of the approach for the characterisation of moderately sized globular proteins is also demonstrated.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  haem regulatory motifs; intrinsically disordered proteins; ion channels; nmr spectroscopy; sequential data acquisition

Mesh:

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Year:  2015        PMID: 25639453     DOI: 10.1002/cphc.201402872

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  4 in total

1.  HN-NCA heteronuclear TOCSY-NH experiment for (1)H(N) and (15)N sequential correlations in ((13)C, (15)N) labelled intrinsically disordered proteins.

Authors:  Christoph Wiedemann; Nishit Goradia; Sabine Häfner; Christian Herbst; Matthias Görlach; Oliver Ohlenschläger; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2015-08-18       Impact factor: 2.835

Review 2.  Troubleshooting Guide to Expressing Intrinsically Disordered Proteins for Use in NMR Experiments.

Authors:  Steffen P Graether
Journal:  Front Mol Biosci       Date:  2019-01-18

3.  Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins.

Authors:  Szymon Żerko; Wiktor Koźmiński
Journal:  J Biomol NMR       Date:  2015-09-24       Impact factor: 2.835

4.  Heme interaction of the intrinsically disordered N-terminal peptide segment of human cystathionine-β-synthase.

Authors:  Amit Kumar; Amelie Wißbrock; Nishit Goradia; Peter Bellstedt; Ramadurai Ramachandran; Diana Imhof; Oliver Ohlenschläger
Journal:  Sci Rep       Date:  2018-02-06       Impact factor: 4.379

  4 in total

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