Literature DB >> 25637996

Predicting the excess solubility of acetanilide, acetaminophen, phenacetin, benzocaine, and caffeine in binary water/ethanol mixtures via molecular simulation.

Andrew S Paluch1, Sreeja Parameswaran2, Shuai Liu3, Anasuya Kolavennu2, David L Mobley3.   

Abstract

We present a general framework to predict the excess solubility of small molecular solids (such as pharmaceutical solids) in binary solvents via molecular simulation free energy calculations at infinite dilution with conventional molecular models. The present study used molecular dynamics with the General AMBER Force Field to predict the excess solubility of acetanilide, acetaminophen, phenacetin, benzocaine, and caffeine in binary water/ethanol solvents. The simulations are able to predict the existence of solubility enhancement and the results are in good agreement with available experimental data. The accuracy of the predictions in addition to the generality of the method suggests that molecular simulations may be a valuable design tool for solvent selection in drug development processes.

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Year:  2015        PMID: 25637996      PMCID: PMC4312346          DOI: 10.1063/1.4906491

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  30 in total

1.  Development and testing of a general amber force field.

Authors:  Junmei Wang; Romain M Wolf; James W Caldwell; Peter A Kollman; David A Case
Journal:  J Comput Chem       Date:  2004-07-15       Impact factor: 3.376

2.  The SAMPL2 blind prediction challenge: introduction and overview.

Authors:  Matthew T Geballe; A Geoffrey Skillman; Anthony Nicholls; J Peter Guthrie; Peter J Taylor
Journal:  J Comput Aided Mol Des       Date:  2010-05-09       Impact factor: 3.686

3.  A method for computing the solubility limit of solids: application to sodium chloride in water and alcohols.

Authors:  Andrew S Paluch; Saivenkataraman Jayaraman; Jindal K Shah; Edward J Maginn
Journal:  J Chem Phys       Date:  2010-09-28       Impact factor: 3.488

4.  Automatic atom type and bond type perception in molecular mechanical calculations.

Authors:  Junmei Wang; Wei Wang; Peter A Kollman; David A Case
Journal:  J Mol Graph Model       Date:  2006-02-03       Impact factor: 2.518

5.  Comparison of charge models for fixed-charge force fields: small-molecule hydration free energies in explicit solvent.

Authors:  David L Mobley; Elise Dumont; John D Chodera; Ken A Dill
Journal:  J Phys Chem B       Date:  2007-02-10       Impact factor: 2.991

6.  Accurate and efficient corrections for missing dispersion interactions in molecular simulations.

Authors:  Michael R Shirts; David L Mobley; John D Chodera; Vijay S Pande
Journal:  J Phys Chem B       Date:  2007-10-19       Impact factor: 2.991

7.  Molecular simulation of aqueous electrolyte solubility. 2. Osmotic ensemble Monte Carlo methodology for free energy and solubility calculations and application to NaCl.

Authors:  Filip Moučka; Martin Lísal; Jiří Škvor; Jan Jirsák; Ivo Nezbeda; William R Smith
Journal:  J Phys Chem B       Date:  2011-05-31       Impact factor: 2.991

8.  Conformer generation with OMEGA: learning from the data set and the analysis of failures.

Authors:  Paul C D Hawkins; Anthony Nicholls
Journal:  J Chem Inf Model       Date:  2012-11-12       Impact factor: 4.956

9.  GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit.

Authors:  Sander Pronk; Szilárd Páll; Roland Schulz; Per Larsson; Pär Bjelkmar; Rossen Apostolov; Michael R Shirts; Jeremy C Smith; Peter M Kasson; David van der Spoel; Berk Hess; Erik Lindahl
Journal:  Bioinformatics       Date:  2013-02-13       Impact factor: 6.937

10.  ACPYPE - AnteChamber PYthon Parser interfacE.

Authors:  Alan W Sousa da Silva; Wim F Vranken
Journal:  BMC Res Notes       Date:  2012-07-23
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  8 in total

1.  Predicting cyclohexane/water distribution coefficients for the SAMPL5 challenge using MOSCED and the SMD solvation model.

Authors:  Sebastian Diaz-Rodriguez; Samantha M Bozada; Jeremy R Phifer; Andrew S Paluch
Journal:  J Comput Aided Mol Des       Date:  2016-08-26       Impact factor: 3.686

2.  New Screening Protocol for Effective Green Solvents Selection of Benzamide, Salicylamide and Ethenzamide.

Authors:  Maciej Przybyłek; Anna Miernicka; Mateusz Nowak; Piotr Cysewski
Journal:  Molecules       Date:  2022-05-22       Impact factor: 4.927

Review 3.  Caffeine and cardiovascular diseases: critical review of current research.

Authors:  Anthony Zulli; Renee M Smith; Peter Kubatka; Jan Novak; Yoshio Uehara; Hayley Loftus; Tawar Qaradakhi; Miroslav Pohanka; Nazarii Kobyliak; Angela Zagatina; Jan Klimas; Alan Hayes; Giampiero La Rocca; Miroslav Soucek; Peter Kruzliak
Journal:  Eur J Nutr       Date:  2016-03-01       Impact factor: 5.614

4.  Approaches for calculating solvation free energies and enthalpies demonstrated with an update of the FreeSolv database.

Authors:  Guilherme Duarte Ramos Matos; Daisy Y Kyu; Hannes H Loeffler; John D Chodera; Michael R Shirts; David L Mobley
Journal:  J Chem Eng Data       Date:  2017-04-24       Impact factor: 2.694

Review 5.  Computational prediction of drug solubility in water-based systems: Qualitative and quantitative approaches used in the current drug discovery and development setting.

Authors:  Christel A S Bergström; Per Larsson
Journal:  Int J Pharm       Date:  2018-02-06       Impact factor: 5.875

Review 6.  Mechanistic Understanding From Molecular Dynamics Simulation in Pharmaceutical Research 1: Drug Delivery.

Authors:  Alex Bunker; Tomasz Róg
Journal:  Front Mol Biosci       Date:  2020-11-25

7.  Molecular Simulation of Chemical Reaction Equilibrium by Computationally Efficient Free Energy Minimization.

Authors:  William R Smith; Weikai Qi
Journal:  ACS Cent Sci       Date:  2018-08-23       Impact factor: 14.553

8.  A Polarization-Consistent Model for Alcohols to Predict Solvation Free Energies.

Authors:  Maria Cecilia Barrera; Miguel Jorge
Journal:  J Chem Inf Model       Date:  2020-02-03       Impact factor: 4.956

  8 in total

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