Literature DB >> 25637681

Applicability of fluorescence-based sensors to the determination of kinetic parameters for O₂ in oxygenases.

Natali V Di Russo1, Steven D Bruner2, Adrian E Roitberg2.   

Abstract

Optical methods for O2 determination based on dynamic fluorescence quenching have been applied to measure oxygen uptake rates in cell culture and to determine intracellular oxygen levels. Here we demonstrate the applicability of fluorescence-based probes in determining kinetic parameters for O2 using as an example catalysis by a cofactor-independent oxygenase (DpgC). Fluorescence-based sensors provide a direct assessment of enzyme-catalyzed O2 consumption using commercially available, low-cost instrumentation that is easily customizable and, thus, constitutes a convenient alternative to the widely used Clark-type electrode, especially in cases where chemical interference is expected to be problematic.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Enzyme assays; Enzyme kinetics; Fluorescence quenching; Oxygen; Oxygenases

Mesh:

Substances:

Year:  2015        PMID: 25637681      PMCID: PMC4402703          DOI: 10.1016/j.ab.2015.01.009

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  12 in total

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Authors:  John T Groves
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-24       Impact factor: 11.205

2.  Molecular dioxygen enters the active site of 12/15-lipoxygenase via dynamic oxygen access channels.

Authors:  Jan Saam; Igor Ivanov; Matthias Walther; Hermann-Georg Holzhütter; Hartmut Kuhn
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-03       Impact factor: 11.205

3.  Structural basis for cofactor-independent dioxygenation in vancomycin biosynthesis.

Authors:  Paul F Widboom; Elisha N Fielding; Ye Liu; Steven D Bruner
Journal:  Nature       Date:  2007-05-17       Impact factor: 49.962

4.  Intracellular measurement of oxygen by quenching of fluorescence of pyrenebutyric acid.

Authors:  J A Knopp; I S Longmuir
Journal:  Biochim Biophys Acta       Date:  1972-09-15

5.  A real-time ratiometric method for the determination of molecular oxygen inside living cells using sol-gel-based spherical optical nanosensors with applications to rat C6 glioma.

Authors:  H Xu; J W Aylott; R Kopelman; T J Miller; M A Philbert
Journal:  Anal Chem       Date:  2001-09-01       Impact factor: 6.986

6.  Membrane inlet for mass spectrometric measurement of catalysis by enzymatic decarboxylases.

Authors:  Mario E G Moral; Chingkuang Tu; Nigel G J Richards; David N Silverman
Journal:  Anal Biochem       Date:  2011-06-30       Impact factor: 3.365

7.  DpgC is a metal- and cofactor-free 3,5-dihydroxyphenylacetyl-CoA 1,2-dioxygenase in the vancomycin biosynthetic pathway.

Authors:  Claire C Tseng; Frédéric H Vaillancourt; Steven D Bruner; Christopher T Walsh
Journal:  Chem Biol       Date:  2004-09

8.  On-line oxygen uptake rate and culture viability measurement of animal cell culture using microplates with integrated oxygen sensors.

Authors:  Rahul Ravi Deshpande; Elmar Heinzle
Journal:  Biotechnol Lett       Date:  2004-05       Impact factor: 2.461

9.  Multiple pathways guide oxygen diffusion into flavoenzyme active sites.

Authors:  Riccardo Baron; Conor Riley; Pirom Chenprakhon; Kittisak Thotsaporn; Remko T Winter; Andrea Alfieri; Federico Forneris; Willem J H van Berkel; Pimchai Chaiyen; Marco W Fraaije; Andrea Mattevi; J Andrew McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-16       Impact factor: 11.205

Review 10.  The oxygen-binding vs. oxygen-consuming paradigm in biocatalysis: structural biology and biomolecular simulation.

Authors:  Riccardo Baron; J Andrew McCammon; Andrea Mattevi
Journal:  Curr Opin Struct Biol       Date:  2009-11-04       Impact factor: 6.809

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  2 in total

1.  Redox processes acidify and decarboxylate steam-pretreated lignocellulosic biomass and are modulated by LPMO and catalase.

Authors:  Ausra Peciulyte; Louise Samuelsson; Lisbeth Olsson; K C McFarland; Jesper Frickmann; Lars Østergård; Rune Halvorsen; Brian R Scott; Katja S Johansen
Journal:  Biotechnol Biofuels       Date:  2018-06-18       Impact factor: 6.040

2.  Oxygen diffusion pathways in a cofactor-independent dioxygenase.

Authors:  Natali V Di Russo; Heather L Condurso; Kunhua Li; Steven D Bruner; Adrian E Roitberg
Journal:  Chem Sci       Date:  2015-07-23       Impact factor: 9.825

  2 in total

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