Literature DB >> 25634281

Analysis of pollutant-induced changes in mitochondrial DNA methylation.

Hyang-Min Byun1, Timothy M Barrow.   

Abstract

There is increasing evidence that exposure to air pollutants is associated with human disease and may act through epigenetic modification of the nuclear genome, but there have been few publications describing their impact upon the mitochondrial genome. Mitochondrial DNA may be more susceptible to pollutant-induced changes via increased oxidative stress in the cell, and therefore this field of research is of growing interest. Many techniques employed to study DNA methylation of the nuclear genome are also applicable to mitochondrial epigenetic studies. In this chapter, we describe a protocol for the isolation of mitochondrial DNA from peripheral blood samples and the analysis of 5-methylcytosine content by bisulfite pyrosequencing.

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Year:  2015        PMID: 25634281      PMCID: PMC4356890          DOI: 10.1007/978-1-4939-2288-8_19

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  25 in total

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Authors:  Vittoria Infantino; Alessandra Castegna; Francesco Iacobazzi; Iolanda Spera; Iris Scala; Generoso Andria; Vito Iacobazzi
Journal:  Mol Genet Metab       Date:  2010-12-09       Impact factor: 4.797

Review 2.  Endothelial mitochondria: contributing to vascular function and disease.

Authors:  Sean M Davidson; Michael R Duchen
Journal:  Circ Res       Date:  2007-04-27       Impact factor: 17.367

3.  LINE-1 methylation in plasma DNA as a biomarker of activity of DNA methylation inhibitors in patients with solid tumors.

Authors:  Ana Aparicio; Brittany North; Lindsey Barske; Xuemei Wang; Valentina Bollati; Daniel Weisenberger; Christine Yoo; Nizar Tannir; Erin Horne; Susan Groshen; Peter Jones; Allen Yang; Jean-Pierre Issa
Journal:  Epigenetics       Date:  2009-04-06       Impact factor: 4.528

4.  Effect of aging on 5-hydroxymethylcytosine in brain mitochondria.

Authors:  Svetlana Dzitoyeva; Hu Chen; Hari Manev
Journal:  Neurobiol Aging       Date:  2012-03-22       Impact factor: 4.673

5.  MethPrimer: designing primers for methylation PCRs.

Authors:  Long-Cheng Li; Rajvir Dahiya
Journal:  Bioinformatics       Date:  2002-11       Impact factor: 6.937

6.  DNA methyltransferase 1, cytosine methylation, and cytosine hydroxymethylation in mammalian mitochondria.

Authors:  Lisa S Shock; Prashant V Thakkar; Erica J Peterson; Richard G Moran; Shirley M Taylor
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-14       Impact factor: 11.205

7.  Changes in DNA methylation patterns in subjects exposed to low-dose benzene.

Authors:  Valentina Bollati; Andrea Baccarelli; Lifang Hou; Matteo Bonzini; Silvia Fustinoni; Domenico Cavallo; Hyang-Min Byun; Jiayi Jiang; Barbara Marinelli; Angela C Pesatori; Pier A Bertazzi; Allen S Yang
Journal:  Cancer Res       Date:  2007-02-01       Impact factor: 12.701

Review 8.  Environmental and occupational exposure to chemicals and telomere length in human studies.

Authors:  Xiao Zhang; Shao Lin; William E Funk; Lifang Hou
Journal:  Occup Environ Med       Date:  2013-06-17       Impact factor: 4.402

9.  Optimization of quantitative MGMT promoter methylation analysis using pyrosequencing and combined bisulfite restriction analysis.

Authors:  Thomas Mikeska; Christoph Bock; Osman El-Maarri; Anika Hübner; Denise Ehrentraut; Johannes Schramm; Jörg Felsberg; Philip Kahl; Reinhard Büttner; Torsten Pietsch; Andreas Waha
Journal:  J Mol Diagn       Date:  2007-07       Impact factor: 5.568

Review 10.  Combined toxic exposures and human health: biomarkers of exposure and effect.

Authors:  Ilona Silins; Johan Högberg
Journal:  Int J Environ Res Public Health       Date:  2011-02-24       Impact factor: 3.390

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  9 in total

1.  Childhood abuse, promoter methylation of leukocyte NR3C1 and the potential modifying effect of emotional support.

Authors:  Alexandra E Shields; Lauren A Wise; Edward A Ruiz-Narvaez; Bobak Seddighzadeh; Hyang-Min Byun; Yvette C Cozier; Lynn Rosenberg; Julie R Palmer; Andrea A Baccarelli
Journal:  Epigenomics       Date:  2016-09-13       Impact factor: 4.778

Review 2.  Does air pollution play a role in infertility?: a systematic review.

Authors:  Julie Carré; Nicolas Gatimel; Jessika Moreau; Jean Parinaud; Roger Léandri
Journal:  Environ Health       Date:  2017-07-28       Impact factor: 5.984

3.  Experimental mitochondria-targeted DNA methylation identifies GpC methylation, not CpG methylation, as potential regulator of mitochondrial gene expression.

Authors:  Monique G P van der Wijst; Amanda Y van Tilburg; Marcel H J Ruiters; Marianne G Rots
Journal:  Sci Rep       Date:  2017-03-14       Impact factor: 4.379

4.  MicroRNA-34a Encapsulated in Hyaluronic Acid Nanoparticles Induces Epigenetic Changes with Altered Mitochondrial Bioenergetics and Apoptosis in Non-Small-Cell Lung Cancer Cells.

Authors:  Malav Trivedi; Amit Singh; Meghna Talekar; Grishma Pawar; Parin Shah; Mansoor Amiji
Journal:  Sci Rep       Date:  2017-06-16       Impact factor: 4.379

5.  The Ageing Brain: Effects on DNA Repair and DNA Methylation in Mice.

Authors:  Sabine A S Langie; Kerry M Cameron; Gabriella Ficz; David Oxley; Bartłomiej Tomaszewski; Joanna P Gorniak; Lou M Maas; Roger W L Godschalk; Frederik J van Schooten; Wolf Reik; Thomas von Zglinicki; John C Mathers
Journal:  Genes (Basel)       Date:  2017-02-17       Impact factor: 4.096

6.  Technical adequacy of bisulfite sequencing and pyrosequencing for detection of mitochondrial DNA methylation: Sources and avoidance of false-positive detection.

Authors:  Chie Owa; Matthew Poulin; Liying Yan; Toshi Shioda
Journal:  PLoS One       Date:  2018-02-08       Impact factor: 3.240

7.  Mitochondrial D-Loop Region Methylation and Copy Number in Peripheral Blood DNA of Parkinson's Disease Patients.

Authors:  Andrea Stoccoro; Adam R Smith; Filippo Baldacci; Claudia Del Gamba; Annalisa Lo Gerfo; Roberto Ceravolo; Katie Lunnon; Lucia Migliore; Fabio Coppedè
Journal:  Genes (Basel)       Date:  2021-05-12       Impact factor: 4.096

8.  CpG methylation patterns of human mitochondrial DNA.

Authors:  Baojing Liu; Qingqing Du; Lu Chen; Guangping Fu; Shujin Li; Lihong Fu; Xiaojing Zhang; Chunling Ma; Cong Bin
Journal:  Sci Rep       Date:  2016-03-21       Impact factor: 4.379

9.  Reduced mitochondrial D-loop methylation levels in sporadic amyotrophic lateral sclerosis.

Authors:  Andrea Stoccoro; Adam R Smith; Lorena Mosca; Alessandro Marocchi; Francesca Gerardi; Christian Lunetta; Cristina Cereda; Stella Gagliardi; Katie Lunnon; Lucia Migliore; Fabio Coppedè
Journal:  Clin Epigenetics       Date:  2020-09-11       Impact factor: 6.551

  9 in total

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