Literature DB >> 25631615

Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.

Henriët Springelkamp1, Aniket Mishra, Pirro G Hysi, Puya Gharahkhani, René Höhn, Chiea-Chuen Khor, Jessica N Cooke Bailey, Xiaoyan Luo, Wishal D Ramdas, Eranga Vithana, Victor Koh, Seyhan Yazar, Liang Xu, Hannah Forward, Lisa S Kearns, Najaf Amin, Adriana I Iglesias, Kar-Seng Sim, Elisabeth M van Leeuwen, Ayse Demirkan, Sven van der Lee, Seng-Chee Loon, Fernando Rivadeneira, Abhishek Nag, Paul G Sanfilippo, Arne Schillert, Paulus T V M de Jong, Ben A Oostra, André G Uitterlinden, Albert Hofman, Tiger Zhou, Kathryn P Burdon, Timothy D Spector, Karl J Lackner, Seang-Mei Saw, Johannes R Vingerling, Yik-Ying Teo, Louis R Pasquale, Roger C W Wolfs, Hans G Lemij, E-Shyong Tai, Jost B Jonas, Ching-Yu Cheng, Tin Aung, Nomdo M Jansonius, Caroline C W Klaver, Jamie E Craig, Terri L Young, Jonathan L Haines, Stuart MacGregor, David A Mackey, Norbert Pfeiffer, Tien-Yin Wong, Janey L Wiggs, Alex W Hewitt, Cornelia M van Duijn, Christopher J Hammond.   

Abstract

Primary open-angle glaucoma is the most common optic neuropathy and an important cause of irreversible blindness worldwide. The optic nerve head or optic disc is divided in two parts: a central cup (without nerve fibers) surrounded by the neuroretinal rim (containing axons of the retinal ganglion cells). The International Glaucoma Genetics Consortium conducted a meta-analysis of genome-wide association studies consisting of 17,248 individuals of European ancestry and 6,841 individuals of Asian ancestry. The outcomes of the genome-wide association studies were disc area and cup area. These specific measurements describe optic nerve morphology in another way than the vertical cup-disc ratio, which is a clinically used measurement, and may shed light on new glaucoma mechanisms. We identified 10 new loci associated with disc area (CDC42BPA, F5, DIRC3, RARB, ABI3BP, DCAF4L2, ELP4, TMTC2, NR2F2, and HORMAD2) and another 10 new loci associated with cup area (DHRS3, TRIB2, EFEMP1, FLNB, FAM101, DDHD1, ASB7, KPNB1, BCAS3, and TRIOBP). The new genes participate in a number of pathways and future work is likely to identify more functions related to the pathogenesis of glaucoma.
© 2015 Wiley Periodicals, Inc.

Entities:  

Keywords:  GWAS; cup area; disc area; glaucoma

Mesh:

Year:  2015        PMID: 25631615      PMCID: PMC4480365          DOI: 10.1002/gepi.21886

Source DB:  PubMed          Journal:  Genet Epidemiol        ISSN: 0741-0395            Impact factor:   2.135


  25 in total

1.  Human optic nerve fiber count and optic disc size.

Authors:  J B Jonas; A M Schmidt; J A Müller-Bergh; U M Schlötzer-Schrehardt; G O Naumann
Journal:  Invest Ophthalmol Vis Sci       Date:  1992-05       Impact factor: 4.799

2.  Defining the human macula transcriptome and candidate retinal disease genes using EyeSAGE.

Authors:  Catherine Bowes Rickman; Jessica N Ebright; Zachary J Zavodni; Ling Yu; Tianyuan Wang; Stephen P Daiger; Graeme Wistow; Kathy Boon; Michael A Hauser
Journal:  Invest Ophthalmol Vis Sci       Date:  2006-06       Impact factor: 4.799

3.  A new multipoint method for genome-wide association studies by imputation of genotypes.

Authors:  Jonathan Marchini; Bryan Howie; Simon Myers; Gil McVean; Peter Donnelly
Journal:  Nat Genet       Date:  2007-06-17       Impact factor: 38.330

4.  Whole genome expression profiling of normal human fetal and adult ocular tissues.

Authors:  Terri L Young; Felicia Hawthorne; Sheng Feng; Xiaoyan Luo; Elizabeth St Germain; Minyue Wang; Ravikanth Metlapally
Journal:  Exp Eye Res       Date:  2013-09-07       Impact factor: 3.467

5.  Histomorphometry of the human optic nerve.

Authors:  J B Jonas; J A Müller-Bergh; U M Schlötzer-Schrehardt; G O Naumann
Journal:  Invest Ophthalmol Vis Sci       Date:  1990-04       Impact factor: 4.799

6.  Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.

Authors:  Yi Lu; Veronique Vitart; Kathryn P Burdon; Chiea Chuen Khor; Yelena Bykhovskaya; Alireza Mirshahi; Alex W Hewitt; Demelza Koehn; Pirro G Hysi; Wishal D Ramdas; Tanja Zeller; Eranga N Vithana; Belinda K Cornes; Wan-Ting Tay; E Shyong Tai; Ching-Yu Cheng; Jianjun Liu; Jia-Nee Foo; Seang Mei Saw; Gudmar Thorleifsson; Kari Stefansson; David P Dimasi; Richard A Mills; Jenny Mountain; Wei Ang; René Hoehn; Virginie J M Verhoeven; Franz Grus; Roger Wolfs; Raphaële Castagne; Karl J Lackner; Henriët Springelkamp; Jian Yang; Fridbert Jonasson; Dexter Y L Leung; Li J Chen; Clement C Y Tham; Igor Rudan; Zoran Vatavuk; Caroline Hayward; Jane Gibson; Angela J Cree; Alex MacLeod; Sarah Ennis; Ozren Polasek; Harry Campbell; James F Wilson; Ananth C Viswanathan; Brian Fleck; Xiaohui Li; David Siscovick; Kent D Taylor; Jerome I Rotter; Seyhan Yazar; Megan Ulmer; Jun Li; Brian L Yaspan; Ayse B Ozel; Julia E Richards; Sayoko E Moroi; Jonathan L Haines; Jae H Kang; Louis R Pasquale; R Rand Allingham; Allison Ashley-Koch; Paul Mitchell; Jie Jin Wang; Alan F Wright; Craig Pennell; Timothy D Spector; Terri L Young; Caroline C W Klaver; Nicholas G Martin; Grant W Montgomery; Michael G Anderson; Tin Aung; Colin E Willoughby; Janey L Wiggs; Chi P Pang; Unnur Thorsteinsdottir; Andrew J Lotery; Christopher J Hammond; Cornelia M van Duijn; Michael A Hauser; Yaron S Rabinowitz; Norbert Pfeiffer; David A Mackey; Jamie E Craig; Stuart Macgregor; Tien Y Wong
Journal:  Nat Genet       Date:  2013-01-06       Impact factor: 38.330

7.  Exon-level expression profiling of ocular tissues.

Authors:  Alex H Wagner; V Nikhil Anand; Wan-Heng Wang; Jon E Chatterton; Duo Sun; Allan R Shepard; Nasreen Jacobson; Iok-Hou Pang; Adam P Deluca; Thomas L Casavant; Todd E Scheetz; Robert F Mullins; Terry A Braun; Abbot F Clark
Journal:  Exp Eye Res       Date:  2013-03-14       Impact factor: 3.467

8.  Tara, a novel F-actin binding protein, associates with the Trio guanine nucleotide exchange factor and regulates actin cytoskeletal organization.

Authors:  K Seipel; S P O'Brien; E Iannotti; Q G Medley; M Streuli
Journal:  J Cell Sci       Date:  2001-01       Impact factor: 5.285

9.  The human PAX6 gene is mutated in two patients with aniridia.

Authors:  T Jordan; I Hanson; D Zaletayev; S Hodgson; J Prosser; A Seawright; N Hastie; V van Heyningen
Journal:  Nat Genet       Date:  1992-08       Impact factor: 38.330

10.  Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.

Authors:  Henriët Springelkamp; René Höhn; Aniket Mishra; Pirro G Hysi; Chiea-Chuen Khor; Stephanie J Loomis; Jessica N Cooke Bailey; Jane Gibson; Gudmar Thorleifsson; Sarah F Janssen; Xiaoyan Luo; Wishal D Ramdas; Eranga Vithana; Monisha E Nongpiur; Grant W Montgomery; Liang Xu; Jenny E Mountain; Puya Gharahkhani; Yi Lu; Najaf Amin; Lennart C Karssen; Kar-Seng Sim; Elisabeth M van Leeuwen; Adriana I Iglesias; Virginie J M Verhoeven; Michael A Hauser; Seng-Chee Loon; Dominiek D G Despriet; Abhishek Nag; Cristina Venturini; Paul G Sanfilippo; Arne Schillert; Jae H Kang; John Landers; Fridbert Jonasson; Angela J Cree; Leonieke M E van Koolwijk; Fernando Rivadeneira; Emmanuelle Souzeau; Vesteinn Jonsson; Geeta Menon; Robert N Weinreb; Paulus T V M de Jong; Ben A Oostra; André G Uitterlinden; Albert Hofman; Sarah Ennis; Unnur Thorsteinsdottir; Kathryn P Burdon; Timothy D Spector; Alireza Mirshahi; Seang-Mei Saw; Johannes R Vingerling; Yik-Ying Teo; Jonathan L Haines; Roger C W Wolfs; Hans G Lemij; E-Shyong Tai; Nomdo M Jansonius; Jost B Jonas; Ching-Yu Cheng; Tin Aung; Ananth C Viswanathan; Caroline C W Klaver; Jamie E Craig; Stuart Macgregor; David A Mackey; Andrew J Lotery; Kari Stefansson; Arthur A B Bergen; Terri L Young; Janey L Wiggs; Norbert Pfeiffer; Tien-Yin Wong; Louis R Pasquale; Alex W Hewitt; Cornelia M van Duijn; Christopher J Hammond
Journal:  Nat Commun       Date:  2014-09-22       Impact factor: 14.919

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  37 in total

Review 1.  Genes, pathways, and animal models in primary open-angle glaucoma.

Authors:  A I Iglesias; H Springelkamp; W D Ramdas; C C W Klaver; R Willemsen; C M van Duijn
Journal:  Eye (Lond)       Date:  2015-08-28       Impact factor: 3.775

2.  The Rotterdam Study: 2016 objectives and design update.

Authors:  Albert Hofman; Guy G O Brusselle; Sarwa Darwish Murad; Cornelia M van Duijn; Oscar H Franco; André Goedegebure; M Arfan Ikram; Caroline C W Klaver; Tamar E C Nijsten; Robin P Peeters; Bruno H Ch Stricker; Henning W Tiemeier; André G Uitterlinden; Meike W Vernooij
Journal:  Eur J Epidemiol       Date:  2015-09-19       Impact factor: 8.082

3.  Quantitative Trait Locus Analysis of SIX1-SIX6 With Retinal Nerve Fiber Layer Thickness in Individuals of European Descent.

Authors:  Jane Z Kuo; Linda M Zangwill; Felipe A Medeiros; Jeffery M Liebmann; Christopher A Girkin; Na'ama Hammel; Jerome I Rotter; Robert N Weinreb
Journal:  Am J Ophthalmol       Date:  2015-04-04       Impact factor: 5.258

4.  Stereo Photo Measured ONH Shape Predicts Development of POAG in Subjects With Ocular Hypertension.

Authors:  Mark Christopher; Michael D Abràmoff; Li Tang; Mae O Gordon; Michael A Kass; Donald L Budenz; John H Fingert; Todd E Scheetz
Journal:  Invest Ophthalmol Vis Sci       Date:  2015-07       Impact factor: 4.799

5.  VEP analysis methods in children with optic nerve hypoplasia: relationship to visual acuity and optic disc diameter.

Authors:  John P Kelly; James O Phillips; Avery H Weiss
Journal:  Doc Ophthalmol       Date:  2016-11-23       Impact factor: 2.379

Review 6.  The genetics of human ageing.

Authors:  David Melzer; Luke C Pilling; Luigi Ferrucci
Journal:  Nat Rev Genet       Date:  2019-11-05       Impact factor: 53.242

7.  The African Descent and Glaucoma Evaluation Study (ADAGES) III: Contribution of Genotype to Glaucoma Phenotype in African Americans: Study Design and Baseline Data.

Authors:  Linda M Zangwill; Radha Ayyagari; Jeffrey M Liebmann; Christopher A Girkin; Robert Feldman; Harvey Dubiner; Keri A Dirkes; Matthew Holmann; Eunice Williams-Steppe; Naama Hammel; Luke J Saunders; Suzanne Vega; Kevin Sandow; Kathryn Roll; Rigby Slight; Daniel Auerbach; Brian C Samuels; Joseph F Panarelli; John P Mitchell; Lama A Al-Aswad; Sung Chul Park; Celso Tello; Jeremy Cotliar; Rajendra Bansal; Paul A Sidoti; George A Cioffi; Dana Blumberg; Robert Ritch; Nicholas P Bell; Lauren S Blieden; Garvin Davis; Felipe A Medeiros; Maggie C Y Ng; Swapan K Das; Nicholette D Palmer; Jasmin Divers; Carl D Langefeld; Barry I Freedman; Donald W Bowden; Mark A Christopher; Yii-der I Chen; Xiuqing Guo; Kent D Taylor; Jerome I Rotter; Robert N Weinreb
Journal:  Ophthalmology       Date:  2018-02-01       Impact factor: 12.079

8.  Glaucoma Risk Alleles in the Ocular Hypertension Treatment Study.

Authors:  Todd E Scheetz; Ben Faga; Lizette Ortega; Ben R Roos; Mae O Gordon; Michael A Kass; Kai Wang; John H Fingert
Journal:  Ophthalmology       Date:  2016-10-01       Impact factor: 12.079

Review 9.  Role of carotenoids and retinoids during heart development.

Authors:  Ioan Ovidiu Sirbu; Aimée Rodica Chiş; Alexander Radu Moise
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2020-01-22       Impact factor: 4.698

Review 10.  Major review: Molecular genetics of primary open-angle glaucoma.

Authors:  Yutao Liu; R Rand Allingham
Journal:  Exp Eye Res       Date:  2017-05-10       Impact factor: 3.467

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