Literature DB >> 25631563

On the predictive ability of mechanistic models for the Haitian cholera epidemic.

Lorenzo Mari1, Enrico Bertuzzo2, Flavio Finger2, Renato Casagrandi3, Marino Gatto3, Andrea Rinaldo4.   

Abstract

Predictive models of epidemic cholera need to resolve at suitable aggregation levels spatial data pertaining to local communities, epidemiological records, hydrologic drivers, waterways, patterns of human mobility and proxies of exposure rates. We address the above issue in a formal model comparison framework and provide a quantitative assessment of the explanatory and predictive abilities of various model settings with different spatial aggregation levels and coupling mechanisms. Reference is made to records of the recent Haiti cholera epidemics. Our intensive computations and objective model comparisons show that spatially explicit models accounting for spatial connections have better explanatory power than spatially disconnected ones for short-to-intermediate calibration windows, while parsimonious, spatially disconnected models perform better with long training sets. On average, spatially connected models show better predictive ability than disconnected ones. We suggest limits and validity of the various approaches and discuss the pathway towards the development of case-specific predictive tools in the context of emergency management.
© 2015 The Author(s) Published by the Royal Society. All rights reserved.

Entities:  

Keywords:  ecohydrology; epidemic forecast; model calibration; model validation; multilayer network model; spatially explicit model

Mesh:

Year:  2015        PMID: 25631563      PMCID: PMC4345467          DOI: 10.1098/rsif.2014.0840

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  35 in total

1.  Disentangling extrinsic from intrinsic factors in disease dynamics: a nonlinear time series approach with an application to cholera.

Authors:  Katia Koelle; Mercedes Pascual
Journal:  Am Nat       Date:  2004-05-18       Impact factor: 3.926

2.  Nepalese origin of cholera epidemic in Haiti.

Authors:  R R Frerichs; P S Keim; R Barrais; R Piarroux
Journal:  Clin Microbiol Infect       Date:  2012-04-17       Impact factor: 8.067

3.  Inference for nonlinear dynamical systems.

Authors:  E L Ionides; C Bretó; A A King
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-22       Impact factor: 11.205

4.  On spatially explicit models of cholera epidemics.

Authors:  E Bertuzzo; R Casagrandi; M Gatto; I Rodriguez-Iturbe; A Rinaldo
Journal:  J R Soc Interface       Date:  2009-07-15       Impact factor: 4.118

5.  Transmission dynamics and control of cholera in Haiti: an epidemic model.

Authors:  Jason R Andrews; Sanjay Basu
Journal:  Lancet       Date:  2011-03-15       Impact factor: 79.321

6.  The origin of the Haitian cholera outbreak strain.

Authors:  Chen-Shan Chin; Jon Sorenson; Jason B Harris; William P Robins; Richelle C Charles; Roger R Jean-Charles; James Bullard; Dale R Webster; Andrew Kasarskis; Paul Peluso; Ellen E Paxinos; Yoshiharu Yamaichi; Stephen B Calderwood; John J Mekalanos; Eric E Schadt; Matthew K Waldor
Journal:  N Engl J Med       Date:  2010-12-09       Impact factor: 91.245

7.  Hyperinfectivity: a critical element in the ability of V. cholerae to cause epidemics?

Authors:  David M Hartley; J Glenn Morris; David L Smith
Journal:  PLoS Med       Date:  2005-12-06       Impact factor: 11.069

8.  Complexity in mathematical models of public health policies: a guide for consumers of models.

Authors:  Sanjay Basu; Jason Andrews
Journal:  PLoS Med       Date:  2013-10-29       Impact factor: 11.069

9.  Cholera in Haiti: reproductive numbers and vaccination coverage estimates.

Authors:  Zindoga Mukandavire; David L Smith; J Glenn Morris
Journal:  Sci Rep       Date:  2013-01-10       Impact factor: 4.379

10.  The dry season in haiti: a window of opportunity to eliminate cholera.

Authors:  Stanislas Rebaudet; Pierre Gazin; Robert Barrais; Sandra Moore; Emmanuel Rossignol; Nickolson Barthelemy; Jean Gaudart; Jacques Boncy; Roc Magloire; Renaud Piarroux
Journal:  PLoS Curr       Date:  2013-06-10
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  9 in total

1.  River networks as ecological corridors: A coherent ecohydrological perspective.

Authors:  Andrea Rinaldo; Marino Gatto; Ignacio Rodriguez-Iturbe
Journal:  Adv Water Resour       Date:  2018-02       Impact factor: 4.510

2.  Mobile phone data highlights the role of mass gatherings in the spreading of cholera outbreaks.

Authors:  Flavio Finger; Tina Genolet; Lorenzo Mari; Guillaume Constantin de Magny; Noël Magloire Manga; Andrea Rinaldo; Enrico Bertuzzo
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-23       Impact factor: 11.205

Review 3.  Quantitative Microbial Risk Assessment and Infectious Disease Transmission Modeling of Waterborne Enteric Pathogens.

Authors:  Andrew F Brouwer; Nina B Masters; Joseph N S Eisenberg
Journal:  Curr Environ Health Rep       Date:  2018-06

4.  Transmission dynamics of cholera in Yemen, 2017: a real time forecasting.

Authors:  Hiroshi Nishiura; Shinya Tsuzuki; Baoyin Yuan; Takayuki Yamaguchi; Yusuke Asai
Journal:  Theor Biol Med Model       Date:  2017-07-26       Impact factor: 2.432

5.  Modeling Biphasic Environmental Decay of Pathogens and Implications for Risk Analysis.

Authors:  Andrew F Brouwer; Marisa C Eisenberg; Justin V Remais; Philip A Collender; Rafael Meza; Joseph N S Eisenberg
Journal:  Environ Sci Technol       Date:  2017-02-08       Impact factor: 9.028

6.  Big-data-driven modeling unveils country-wide drivers of endemic schistosomiasis.

Authors:  Lorenzo Mari; Marino Gatto; Manuela Ciddio; Elhadji D Dia; Susanne H Sokolow; Giulio A De Leo; Renato Casagrandi
Journal:  Sci Rep       Date:  2017-03-28       Impact factor: 4.379

7.  Spread and dynamics of the COVID-19 epidemic in Italy: Effects of emergency containment measures.

Authors:  Marino Gatto; Enrico Bertuzzo; Lorenzo Mari; Stefano Miccoli; Luca Carraro; Renato Casagrandi; Andrea Rinaldo
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-23       Impact factor: 11.205

8.  Epidemicity of cholera spread and the fate of infection control measures.

Authors:  Cristiano Trevisin; Joseph C Lemaitre; Lorenzo Mari; Damiano Pasetto; Marino Gatto; Andrea Rinaldo
Journal:  J R Soc Interface       Date:  2022-03-09       Impact factor: 4.118

9.  Near real-time forecasting for cholera decision making in Haiti after Hurricane Matthew.

Authors:  Damiano Pasetto; Flavio Finger; Anton Camacho; Francesco Grandesso; Sandra Cohuet; Joseph C Lemaitre; Andrew S Azman; Francisco J Luquero; Enrico Bertuzzo; Andrea Rinaldo
Journal:  PLoS Comput Biol       Date:  2018-05-16       Impact factor: 4.475

  9 in total

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