Literature DB >> 25615977

Crystallization and preliminary X-ray analysis of the NAD+-reducing [NiFe] hydrogenase from Hydrogenophilus thermoluteolus TH-1.

Midori Taketa1, Hanae Nakagawa1, Mao Habukawa1, Hisao Osuka1, Kiyohito Kihira1, Hirofumi Komori1, Naoki Shibata1, Masaharu Ishii2, Yasuo Igarashi2, Hirofumi Nishihara3, Ki-Seok Yoon4, Seiji Ogo4, Yasuhito Shomura1, Yoshiki Higuchi1.   

Abstract

NAD+-reducing [NiFe] hydrogenases catalyze the oxidoreduction of dihydrogen concomitant with the interconversion of NAD+ and NADH. Here, the isolation, purification and crystallization of the NAD+-reducing [NiFe] hydrogenase from Hydrogenophilus thermoluteolus TH-1 are reported. Crystals of the NAD+-reducing [NiFe] hydrogenase were obtained within one week from a solution containing polyethylene glycol using the sitting-drop vapour-diffusion method and micro-seeding. The crystal diffracted to 2.58 Å resolution and belonged to space group C2, with unit-cell parameters a=131.43, b=189.71, c=124.59 Å, β=109.42°. Assuming the presence of two NAD+-reducing [NiFe] hydrogenase molecules in the asymmetric unit, VM was calculated to be 2.2 Å3 Da(-1), which corresponds to a solvent content of 43%. Initial phases were determined by the single-wavelength anomalous dispersion method using the anomalous signal from the Fe atoms.

Entities:  

Keywords:  NAD+-reducing [NiFe] hydrogenase; diaphorase; hydrogen metabolism; respiratory complex I

Mesh:

Substances:

Year:  2015        PMID: 25615977      PMCID: PMC4304756          DOI: 10.1107/S2053230X14026521

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  22 in total

1.  The crystal structure of an oxygen-tolerant hydrogenase uncovers a novel iron-sulphur centre.

Authors:  Johannes Fritsch; Patrick Scheerer; Stefan Frielingsdorf; Sebastian Kroschinsky; Bärbel Friedrich; Oliver Lenz; Christian M T Spahn
Journal:  Nature       Date:  2011-10-16       Impact factor: 49.962

2.  Structural basis for a [4Fe-3S] cluster in the oxygen-tolerant membrane-bound [NiFe]-hydrogenase.

Authors:  Yasuhito Shomura; Ki-Seok Yoon; Hirofumi Nishihara; Yoshiki Higuchi
Journal:  Nature       Date:  2011-10-16       Impact factor: 49.962

3.  Nucleotide sequence and expression of an operon in Escherichia coli coding for formate hydrogenlyase components.

Authors:  R Böhm; M Sauter; A Böck
Journal:  Mol Microbiol       Date:  1990-02       Impact factor: 3.501

4.  Selective release and function of one of the two FMN groups in the cytoplasmic NAD+-reducing [NiFe]-hydrogenase from Ralstonia eutropha.

Authors:  Eddy van der Linden; Bart W Faber; Boris Bleijlevens; Tanja Burgdorf; Michael Bernhard; Bärbel Friedrich; Simon P J Albracht
Journal:  Eur J Biochem       Date:  2004-02

5.  Hydrogenophilus thermoluteolus gen. nov., sp. nov., a thermophilic, facultatively chemolithoautotrophic, hydrogen-oxidizing bacterium.

Authors:  N R Hayashi; T Ishida; A Yokota; T Kodama; Y Igarashi
Journal:  Int J Syst Bacteriol       Date:  1999-04

6.  How Escherichia coli is equipped to oxidize hydrogen under different redox conditions.

Authors:  Michael J Lukey; Alison Parkin; Maxie M Roessler; Bonnie J Murphy; Jeffrey Harmer; Tracy Palmer; Frank Sargent; Fraser A Armstrong
Journal:  J Biol Chem       Date:  2009-11-16       Impact factor: 5.157

7.  Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus.

Authors:  Leonid A Sazanov; Philip Hinchliffe
Journal:  Science       Date:  2006-02-09       Impact factor: 47.728

Review 8.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

9.  Electrocatalytic hydrogen oxidation by an enzyme at high carbon monoxide or oxygen levels.

Authors:  Kylie A Vincent; James A Cracknell; Oliver Lenz; Ingo Zebger; Bärbel Friedrich; Fraser A Armstrong
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-31       Impact factor: 11.205

10.  Crystal structure of the entire respiratory complex I.

Authors:  Rozbeh Baradaran; John M Berrisford; Gurdeep S Minhas; Leonid A Sazanov
Journal:  Nature       Date:  2013-02-17       Impact factor: 49.962

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  1 in total

1.  Enzymatic and spectroscopic properties of a thermostable [NiFe]‑hydrogenase performing H2-driven NAD+-reduction in the presence of O2.

Authors:  Janina Preissler; Stefan Wahlefeld; Christian Lorent; Christian Teutloff; Marius Horch; Lars Lauterbach; Stephen P Cramer; Ingo Zebger; Oliver Lenz
Journal:  Biochim Biophys Acta Bioenerg       Date:  2017-09-29       Impact factor: 3.991

  1 in total

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