Literature DB >> 25615976

Structures of the N-acetyltransferase domain of Xylella fastidiosa N-acetyl-L-glutamate synthase/kinase with and without a His tag bound to N-acetyl-L-glutamate.

Gengxiang Zhao1, Zhongmin Jin2, Norma M Allewell3, Mendel Tuchman1, Dashuang Shi1.   

Abstract

Structures of the catalytic N-acetyltransferase (NAT) domain of the bifunctional N-acetyl-L-glutamate synthase/kinase (NAGS/K) from Xylella fastidiosa bound to N-acetyl-L-glutamate (NAG) with and without an N-terminal His tag have been solved and refined at 1.7 and 1.4 Å resolution, respectively. The NAT domain with an N-terminal His tag crystallized in space group P4(1)2(1)2, with unit-cell parameters a=b=51.72, c=242.31 Å. Two subunits form a molecular dimer in the asymmetric unit, which contains ∼41% solvent. The NAT domain without an N-terminal His tag crystallized in space group P21, with unit-cell parameters a=63.48, b=122.34, c=75.88 Å, β=107.6°. Eight subunits, which form four molecular dimers, were identified in the asymmetric unit, which contains ∼38% solvent. The structures with and without the N-terminal His tag provide an opportunity to evaluate how the His tag affects structure and function. Furthermore, multiple subunits in different packing environments allow an assessment of the plasticity of the NAG binding site, which might be relevant to substrate binding and product release. The dimeric structure of the X. fastidiosa N-acetytransferase (xfNAT) domain is very similar to that of human N-acetyltransferase (hNAT), reinforcing the notion that mammalian NAGS is evolutionally derived from bifunctional bacterial NAGS/K.

Entities:  

Keywords:  GCN5 N-acetyltransferase; N-acetylglutamate; N-acetylglutamate kinase; N-acetylglutamate synthase; arginine biosynthesis; bifunctional enzymes

Mesh:

Substances:

Year:  2015        PMID: 25615976      PMCID: PMC4304755          DOI: 10.1107/S2053230X14026788

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  35 in total

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3.  Likelihood-enhanced fast rotation functions.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-02-25

4.  His-tag impact on structure.

Authors:  Mike Carson; David H Johnson; Heather McDonald; Christie Brouillette; Lawrence J Delucas
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-02-21

5.  Expression, crystallization and preliminary crystallographic studies of a novel bifunctional N-acetylglutamate synthase/kinase from Xanthomonas campestris homologous to vertebrate N-acetylglutamate synthase.

Authors:  Dashuang Shi; Ljubica Caldovic; Zhongmin Jin; Xiaolin Yu; Qiuhao Qu; Lauren Roth; Hiroki Morizono; Yetrib Hathout; Norma M Allewell; Mendel Tuchman
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-11-30

6.  Use of TLS parameters to model anisotropic displacements in macromolecular refinement.

Authors:  M D Winn; M N Isupov; G N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-01

7.  Structure and catalytic mechanism of a novel N-succinyl-L-ornithine transcarbamylase in arginine biosynthesis of Bacteroides fragilis.

Authors:  Dashuang Shi; Hiroki Morizono; Juan Cabrera-Luque; Xiaolin Yu; Lauren Roth; Michael H Malamy; Norma M Allewell; Mendel Tuchman
Journal:  J Biol Chem       Date:  2006-05-16       Impact factor: 5.157

8.  Identification, cloning and expression of the mouse N-acetylglutamate synthase gene.

Authors:  Ljubica Caldovic; Hiroki Morizono; Xiaolin Yu; Mark Thompson; Dashuang Shi; Rene Gallegos; Norma M Allewell; Michael H Malamy; Mendel Tuchman
Journal:  Biochem J       Date:  2002-06-15       Impact factor: 3.857

Review 9.  GCN5-related N-acetyltransferases: a structural overview.

Authors:  F Dyda; D C Klein; A B Hickman
Journal:  Annu Rev Biophys Biomol Struct       Date:  2000

10.  Crystal structure of tabtoxin resistance protein complexed with acetyl coenzyme A reveals the mechanism for beta-lactam acetylation.

Authors:  Hongzhen He; Yi Ding; Mark Bartlam; Fei Sun; Yi Le; Xincheng Qin; Hong Tang; Rongguang Zhang; Andrzej Joachimiak; Jinyuan Liu; Nanming Zhao; Zihe Rao
Journal:  J Mol Biol       Date:  2003-01-31       Impact factor: 5.469

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  1 in total

Review 1.  The N-Acetylglutamate Synthase Family: Structures, Function and Mechanisms.

Authors:  Dashuang Shi; Norma M Allewell; Mendel Tuchman
Journal:  Int J Mol Sci       Date:  2015-06-09       Impact factor: 5.923

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