Literature DB >> 25615392

Exact distributions for stochastic gene expression models with bursting and feedback.

Niraj Kumar1, Thierry Platini2, Rahul V Kulkarni1.   

Abstract

Stochasticity in gene expression can give rise to fluctuations in protein levels and lead to phenotypic variation across a population of genetically identical cells. Recent experiments indicate that bursting and feedback mechanisms play important roles in controlling noise in gene expression and phenotypic variation. A quantitative understanding of the impact of these factors requires analysis of the corresponding stochastic models. However, for stochastic models of gene expression with feedback and bursting, exact analytical results for protein distributions have not been obtained so far. Here, we analyze a model of gene expression with bursting and feedback regulation and obtain exact results for the corresponding protein steady-state distribution. The results obtained provide new insights into the role of bursting and feedback in noise regulation and optimization. Furthermore, for a specific choice of parameters, the system studied maps on to a two-state biochemical switch driven by a bursty input noise source. The analytical results derived provide quantitative insights into diverse cellular processes involving noise in gene expression and biochemical switching.

Mesh:

Year:  2014        PMID: 25615392     DOI: 10.1103/PhysRevLett.113.268105

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  17 in total

1.  Dichotomous noise models of gene switches.

Authors:  Davit A Potoyan; Peter G Wolynes
Journal:  J Chem Phys       Date:  2015-11-21       Impact factor: 3.488

2.  Gene expression noise is affected differentially by feedback in burst frequency and burst size.

Authors:  Pavol Bokes; Abhyudai Singh
Journal:  J Math Biol       Date:  2016-09-24       Impact factor: 2.259

Review 3.  Stochastic Modeling of Autoregulatory Genetic Feedback Loops: A Review and Comparative Study.

Authors:  James Holehouse; Zhixing Cao; Ramon Grima
Journal:  Biophys J       Date:  2020-02-25       Impact factor: 4.033

4.  Queuing Models of Gene Expression: Analytical Distributions and Beyond.

Authors:  Changhong Shi; Yiguo Jiang; Tianshou Zhou
Journal:  Biophys J       Date:  2020-09-09       Impact factor: 4.033

5.  Revisiting the Reduction of Stochastic Models of Genetic Feedback Loops with Fast Promoter Switching.

Authors:  James Holehouse; Ramon Grima
Journal:  Biophys J       Date:  2019-08-27       Impact factor: 4.033

6.  Constraining the complexity of promoter dynamics using fluctuations in gene expression.

Authors:  Niraj Kumar; Rahul V Kulkarni
Journal:  Phys Biol       Date:  2019-11-05       Impact factor: 2.583

7.  Limit theorems for generalized density-dependent Markov chains and bursty stochastic gene regulatory networks.

Authors:  Xian Chen; Chen Jia
Journal:  J Math Biol       Date:  2019-11-21       Impact factor: 2.259

8.  Volumetric compression develops noise-driven single-cell heterogeneity.

Authors:  Xing Zhao; Jiliang Hu; Yiwei Li; Ming Guo
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-21       Impact factor: 12.779

9.  Transcriptional Bursting in Gene Expression: Analytical Results for General Stochastic Models.

Authors:  Niraj Kumar; Abhyudai Singh; Rahul V Kulkarni
Journal:  PLoS Comput Biol       Date:  2015-10-16       Impact factor: 4.475

10.  Bursting noise in gene expression dynamics: linking microscopic and mesoscopic models.

Authors:  Yen Ting Lin; Tobias Galla
Journal:  J R Soc Interface       Date:  2016-01       Impact factor: 4.118

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