Literature DB >> 25612298

Catalytic nucleic acids (DNAzymes) as functional units for logic gates and computing circuits: from basic principles to practical applications.

Ron Orbach1, Bilha Willner, Itamar Willner.   

Abstract

This feature article addresses the implementation of catalytic nucleic acids as functional units for the construction of logic gates and computing circuits, and discusses the future applications of these systems. The assembly of computational modules composed of DNAzymes has led to the operation of a universal set of logic gates, to field programmable logic gates and computing circuits, to the development of multiplexers/demultiplexers, and to full-adder systems. Also, DNAzyme cascades operating as logic gates and computing circuits were demonstrated. DNAzyme logic systems find important practical applications. These include the use of DNAzyme-based systems for sensing and multiplexed analyses, for the development of controlled release and drug delivery systems, for regulating intracellular biosynthetic pathways, and for the programmed synthesis and operation of cascades.

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Year:  2015        PMID: 25612298     DOI: 10.1039/c4cc09874a

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  17 in total

Review 1.  Catalytic DNA: Scope, Applications, and Biochemistry of Deoxyribozymes.

Authors:  Scott K Silverman
Journal:  Trends Biochem Sci       Date:  2016-05-25       Impact factor: 13.807

2.  Enzyme-free amplified detection of circulating microRNA by making use of DNA circuits, a DNAzyme, and a catalytic hairpin assembly.

Authors:  Jie Luo; Yongjie Xu; Jian Huang; Shu Zhang; Qi Xu; Jun He
Journal:  Mikrochim Acta       Date:  2017-12-08       Impact factor: 5.833

Review 3.  Biosensing with DNAzymes.

Authors:  Erin M McConnell; Ioana Cozma; Quanbing Mou; John D Brennan; Yi Lu; Yingfu Li
Journal:  Chem Soc Rev       Date:  2021-07-06       Impact factor: 60.615

Review 4.  Thirty-five years of research into ribozymes and nucleic acid catalysis: where do we stand today?

Authors:  Sabine Müller; Bettina Appel; Darko Balke; Robert Hieronymus; Claudia Nübel
Journal:  F1000Res       Date:  2016-06-27

5.  Continuous variables logic via coupled automata using a DNAzyme cascade with feedback.

Authors:  S Lilienthal; M Klein; R Orbach; I Willner; F Remacle; R D Levine
Journal:  Chem Sci       Date:  2016-12-01       Impact factor: 9.825

6.  Multiple advanced logic gates made of DNA-Ag nanocluster and the application for intelligent detection of pathogenic bacterial genes.

Authors:  Xiaodong Lin; Yaqing Liu; Jiankang Deng; Yanlong Lyu; Pengcheng Qian; Yunfei Li; Shuo Wang
Journal:  Chem Sci       Date:  2018-01-08       Impact factor: 9.825

7.  A label-free and enzyme-free platform with a visible output for constructing versatile logic gates using caged G-quadruplex as the signal transducer.

Authors:  Junhua Chen; Jiafeng Pan; Shu Chen
Journal:  Chem Sci       Date:  2017-10-20       Impact factor: 9.825

8.  A RET-supported logic gate combinatorial library to enable modeling and implementation of intelligent logic functions.

Authors:  Ru-Ru Gao; Shuo Shi; Ying Zhu; Hai-Liang Huang; Tian-Ming Yao
Journal:  Chem Sci       Date:  2015-11-23       Impact factor: 9.825

9.  Stimuli-responsive nucleic acid-functionalized metal-organic framework nanoparticles using pH- and metal-ion-dependent DNAzymes as locks.

Authors:  Wei-Hai Chen; Xu Yu; Alessandro Cecconello; Yang Sung Sohn; Rachel Nechushtai; Itamar Willner
Journal:  Chem Sci       Date:  2017-06-06       Impact factor: 9.825

Review 10.  DNA Assembly-Based Stimuli-Responsive Systems.

Authors:  Shasha Lu; Jianlei Shen; Chunhai Fan; Qian Li; Xiurong Yang
Journal:  Adv Sci (Weinh)       Date:  2021-05-14       Impact factor: 16.806

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