Literature DB >> 25609016

Metabolomics-derived prostate cancer biomarkers: fact or fiction?

Deepak Kumar1, Ashish Gupta, Anil Mandhani, Satya Narain Sankhwar.   

Abstract

Despite continuing research for precise probing and grading of prostate cancer (PC) biomarkers, the indexes lack sensitivity and specificity. To search for PC biomarkers, we used proton nuclear magnetic resonance ((1)H NMR)-derived serum metabolomics. The study comprises 102 serum samples obtained from low-grade (LG, n = 40) and high-grade (HG, n = 30) PC cases and healthy controls (HC, n = 32). (1)H NMR-derived serum data were examined using principal component analysis and orthogonal partial least-squares discriminant analysis. The strength of the model was verified by internal cross-validation using the same samples divided into 70% as training and 30% as test data sets. Receiver operating characteristic (ROC) curve examination was also achieved. Serum metabolomics reveals that four biomarkers (alanine, pyruvate, glycine, and sarcosine) were able to accurately (ROC 0.966) differentiate 90.2% of PC cases with 84.4% sensitivity and 92.9% specificity compared with HC. Similarly, three biomarkers, alanine, pyruvate, and glycine, were able to precisely (ROC 0.978) discriminate 92.9% of LG from HG PC with 92.5% sensitivity and 93.3% specificity. The robustness of these biomarkers was confirmed by prediction of the test data set with >99% diagnostic precision for PC determination. These findings demonstrate that (1)H NMR-based serum metabolomics is a promising approach for probing and grading PC.

Entities:  

Keywords:  NMR spectroscopy; OPLS-DA; PCA; prostate cancer; serum-metabolomics

Mesh:

Substances:

Year:  2015        PMID: 25609016     DOI: 10.1021/pr5011108

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  17 in total

Review 1.  Metabolomic profiling of hormone-dependent cancers: a bird's eye view.

Authors:  Stacy M Lloyd; James Arnold; Arun Sreekumar
Journal:  Trends Endocrinol Metab       Date:  2015-08-01       Impact factor: 12.015

Review 2.  Recent Advances in NMR-Based Metabolomics.

Authors:  G A Nagana Gowda; Daniel Raftery
Journal:  Anal Chem       Date:  2016-12-02       Impact factor: 6.986

Review 3.  Circulating metabolite biomarkers: a game changer in the human prostate cancer diagnosis.

Authors:  Sabareeswaran Krishnan; Shruthi Kanthaje; Devasya Rekha Punchappady; M Mujeeburahiman; Chandrahas Koumar Ratnacaram
Journal:  J Cancer Res Clin Oncol       Date:  2022-06-28       Impact factor: 4.553

Review 4.  Nuclear magnetic resonance spectroscopy as a new approach for improvement of early diagnosis and risk stratification of prostate cancer.

Authors:  Bo Yang; Guo-Qiang Liao; Xiao-Fei Wen; Wei-Hua Chen; Sheng Cheng; Jens-Uwe Stolzenburg; Roman Ganzer; Jochen Neuhaus
Journal:  J Zhejiang Univ Sci B       Date:  2017 Nov.       Impact factor: 3.066

5.  1H NMR Metabolomics Reveals Association of High Expression of Inositol 1, 4, 5 Trisphosphate Receptor and Metabolites in Breast Cancer Patients.

Authors:  Aru Singh; Raj Kumar Sharma; Megha Chagtoo; Gaurav Agarwal; Nelson George; Neeraj Sinha; Madan M Godbole
Journal:  PLoS One       Date:  2017-01-10       Impact factor: 3.240

6.  Non-invasive urinary metabolomic profiling discriminates prostate cancer from benign prostatic hyperplasia.

Authors:  Clara Pérez-Rambla; Leonor Puchades-Carrasco; María García-Flores; José Rubio-Briones; José Antonio López-Guerrero; Antonio Pineda-Lucena
Journal:  Metabolomics       Date:  2017-03-09       Impact factor: 4.290

7.  Surface-enhanced Raman spectroscopy of serum accurately detects prostate cancer in patients with prostate-specific antigen levels of 4-10 ng/mL.

Authors:  Na Chen; Ming Rong; Xiaoguang Shao; Heng Zhang; Shupeng Liu; Baijun Dong; Wei Xue; Tingyun Wang; Taihao Li; Jiahua Pan
Journal:  Int J Nanomedicine       Date:  2017-07-27

8.  Response of Degarelix treatment in human prostate cancer monitored by HR-MAS 1H NMR spectroscopy.

Authors:  Basetti Madhu; Greg L Shaw; Anne Y Warren; David E Neal; John R Griffiths
Journal:  Metabolomics       Date:  2016-06-30       Impact factor: 4.290

Review 9.  Biomarker Discovery in Human Prostate Cancer: an Update in Metabolomics Studies.

Authors:  Ana Rita Lima; Maria de Lourdes Bastos; Márcia Carvalho; Paula Guedes de Pinho
Journal:  Transl Oncol       Date:  2016-08       Impact factor: 4.243

10.  Sarcosine Up-Regulates Expression of Genes Involved in Cell Cycle Progression of Metastatic Models of Prostate Cancer.

Authors:  Zbynek Heger; Miguel Angel Merlos Rodrigo; Petr Michalek; Hana Polanska; Michal Masarik; Vitezslav Vit; Mariana Plevova; Dalibor Pacik; Tomas Eckschlager; Marie Stiborova; Vojtech Adam
Journal:  PLoS One       Date:  2016-11-08       Impact factor: 3.240

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