Literature DB >> 25604083

Copy number variation of two separate regulatory regions upstream of SOX9 causes isolated 46,XY or 46,XX disorder of sex development.

Gwang-Jin Kim1, Elisabeth Sock2, Astrid Buchberger3, Walter Just4, Friederike Denzer5, Wolfgang Hoepffner6, James German7, Trevor Cole8, Jillian Mann9, John H Seguin10, William Zipf11, Colm Costigan12, Hardi Schmiady13, Moritz Rostásy14, Mildred Kramer14, Simon Kaltenbach14, Bernd Rösler14, Ina Georg15, Elke Troppmann14, Anne-Christin Teichmann14, Anika Salfelder16, Sebastian A Widholz2, Peter Wieacker17, Olaf Hiort18, Giovanna Camerino19, Orietta Radi19, Michael Wegner2, Hans-Henning Arnold3, Gerd Scherer14.   

Abstract

BACKGROUND: SOX9 mutations cause the skeletal malformation syndrome campomelic dysplasia in combination with XY sex reversal. Studies in mice indicate that SOX9 acts as a testis-inducing transcription factor downstream of SRY, triggering Sertoli cell and testis differentiation. An SRY-dependent testis-specific enhancer for Sox9 has been identified only in mice. A previous study has implicated copy number variations (CNVs) of a 78 kb region 517-595 kb upstream of SOX9 in the aetiology of both 46,XY and 46,XX disorders of sex development (DSD). We wanted to better define this region for both disorders.
RESULTS: By CNV analysis, we identified SOX9 upstream duplications in three cases of SRY-negative 46,XX DSD, which together with previously reported duplications define a 68 kb region, 516-584 kb upstream of SOX9, designated XXSR (XX sex reversal region). More importantly, we identified heterozygous deletions in four families with SRY-positive 46,XY DSD without skeletal phenotype, which define a 32.5 kb interval 607.1-639.6 kb upstream of SOX9, designated XY sex reversal region (XYSR). To localise the suspected testis-specific enhancer, XYSR subfragments were tested in cell transfection and transgenic experiments. While transgenic experiments remained inconclusive, a 1.9 kb SRY-responsive subfragment drove expression specifically in Sertoli-like cells.
CONCLUSIONS: Our results indicate that isolated 46,XY and 46,XX DSD can be assigned to two separate regulatory regions, XYSR and XXSR, far upstream of SOX9. The 1.9 kb SRY-responsive subfragment from the XYSR might constitute the core of the Sertoli-cell enhancer of human SOX9, representing the so far missing link in the genetic cascade of male sex determination. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions.

Entities:  

Keywords:  SOX9; SRY; disorder of sex development; enhancer; long-range control

Mesh:

Substances:

Year:  2015        PMID: 25604083     DOI: 10.1136/jmedgenet-2014-102864

Source DB:  PubMed          Journal:  J Med Genet        ISSN: 0022-2593            Impact factor:   6.318


  25 in total

1.  SOX9 chromatin folding domains correlate with its real and putative distant cis-regulatory elements.

Authors:  Marta Smyk; Kadir Caner Akdemir; Paweł Stankiewicz
Journal:  Nucleus       Date:  2017-01-13       Impact factor: 4.197

2.  Genome-wide identification of regulatory elements in Sertoli cells.

Authors:  Danielle M Maatouk; Anirudh Natarajan; Yoichiro Shibata; Lingyun Song; Gregory E Crawford; Uwe Ohler; Blanche Capel
Journal:  Development       Date:  2017-01-13       Impact factor: 6.868

Review 3.  Recent findings on the genetics of disorders of sex development.

Authors:  Jessica Kremen; Yee-Ming Chan; Jonathan M Swartz
Journal:  Curr Opin Urol       Date:  2017-01       Impact factor: 2.309

4.  [Effect of down-regulation of sex determining region Y-box 9 on epithelial mesenchymal transition and cloning of oral squamous carcinoma cells].

Authors:  Wen-Li Yang; Ming-Lei Sun; Peng Zhang; Wei-Wei Yu; Hai-Xia Zhou; Qiang Sun
Journal:  Hua Xi Kou Qiang Yi Xue Za Zhi       Date:  2019-02-01

5.  Formation of new chromatin domains determines pathogenicity of genomic duplications.

Authors:  Martin Franke; Daniel M Ibrahim; Guillaume Andrey; Wibke Schwarzer; Verena Heinrich; Robert Schöpflin; Katerina Kraft; Rieke Kempfer; Ivana Jerković; Wing-Lee Chan; Malte Spielmann; Bernd Timmermann; Lars Wittler; Ingo Kurth; Paola Cambiaso; Orsetta Zuffardi; Gunnar Houge; Lindsay Lambie; Francesco Brancati; Ana Pombo; Martin Vingron; Francois Spitz; Stefan Mundlos
Journal:  Nature       Date:  2016-10-05       Impact factor: 49.962

Review 6.  Cis-Regulatory Control of Mammalian Sex Determination.

Authors:  Meshi Ridnik; Stefan Schoenfelder; Nitzan Gonen
Journal:  Sex Dev       Date:  2021-10-28       Impact factor: 1.824

7.  Linking circular intronic RNA degradation and function in transcription by RNase H1.

Authors:  Xiang Li; Jia-Lin Zhang; Yun-Ni Lei; Xiao-Qi Liu; Wei Xue; Yang Zhang; Fan Nan; Xiang Gao; Jun Zhang; Jia Wei; Li Yang; Ling-Ling Chen
Journal:  Sci China Life Sci       Date:  2021-08-25       Impact factor: 6.038

8.  Copy number variation in the region harboring SOX9 gene in dogs with testicular/ovotesticular disorder of sex development (78,XX; SRY-negative).

Authors:  Malgorzata Marcinkowska-Swojak; Izabela Szczerbal; Hubert Pausch; Joanna Nowacka-Woszuk; Krzysztof Flisikowski; Stanislaw Dzimira; Wojciech Nizanski; Rita Payan-Carreira; Ruedi Fries; Piotr Kozlowski; Marek Switonski
Journal:  Sci Rep       Date:  2015-10-01       Impact factor: 4.379

9.  Sex reversal following deletion of a single distal enhancer of Sox9.

Authors:  Nitzan Gonen; Chris R Futtner; Sophie Wood; S Alexandra Garcia-Moreno; Isabella M Salamone; Shiela C Samson; Ryohei Sekido; Francis Poulat; Danielle M Maatouk; Robin Lovell-Badge
Journal:  Science       Date:  2018-06-14       Impact factor: 47.728

10.  Gonadal supporting cells acquire sex-specific chromatin landscapes during mammalian sex determination.

Authors:  S Alexandra Garcia-Moreno; Christopher R Futtner; Isabella M Salamone; Nitzan Gonen; Robin Lovell-Badge; Danielle M Maatouk
Journal:  Dev Biol       Date:  2018-12-27       Impact factor: 3.582

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