Literature DB >> 25602519

CDC28 phosphorylates Cac1p and regulates the association of chromatin assembly factor I with chromatin.

Daniel C B Jeffery1, Naoko Kakusho, Zhiying You, Marlene Gharib, Brandon Wyse, Erin Drury, Michael Weinreich, Pierre Thibault, Alain Verreault, Hisao Masai, Krassimir Yankulov.   

Abstract

Chromatin Assembly Factor I (CAF-I) plays a key role in the replication-coupled assembly of nucleosomes. It is expected that its function is linked to the regulation of the cell cycle, but little detail is available. Current models suggest that CAF-I is recruited to replication forks and to chromatin via an interaction between its Cac1p subunit and the replication sliding clamp, PCNA, and that this interaction is stimulated by the kinase CDC7. Here we show that another kinase, CDC28, phosphorylates Cac1p on serines 94 and 515 in early S phase and regulates its association with chromatin, but not its association with PCNA. Mutations in the Cac1p-phosphorylation sites of CDC28 but not of CDC7 substantially reduce the in vivo phosphorylation of Cac1p. However, mutations in the putative CDC7 target sites on Cac1p reduce its stability. The association of CAF-I with chromatin is impaired in a cdc28-1 mutant and to a lesser extent in a cdc7-1 mutant. In addition, mutations in the Cac1p-phosphorylation sites by both CDC28 and CDC7 reduce gene silencing at the telomeres. We propose that this phosphorylation represents a regulatory step in the recruitment of CAF-I to chromatin in early S phase that is distinct from the association of CAF-I with PCNA. Hence, we implicate CDC28 in the regulation of chromatin reassembly during DNA replication. These findings provide novel mechanistic insights on the links between cell-cycle regulation, DNA replication and chromatin reassembly.

Entities:  

Keywords:  CAC1, the largest subunit of CAF-I; CAF-I, Chromatin Assembly Factor I; CDK, Cyclin-Dependent Kinase; Cdc28p; Cell cycle; Chromatin Assembly Factor I (CAF-I); Cyclin-Dependent Kinase 8 (CDK8); DDK, Dbf4-Dependent Kinase, Cdc7p-Dbf4p; Dbf4-Dependent Kinase (DDK); PCNA, Proliferating Cell Nuclear Antigen, POL30; PIP, PCNA Interaction Peptide; Proliferating Cell Nuclear Antigen (PCNA); TPE; Telomere Position Effect

Mesh:

Substances:

Year:  2015        PMID: 25602519      PMCID: PMC4352963          DOI: 10.4161/15384101.2014.973745

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  47 in total

1.  Assembly of a complex containing Cdc45p, replication protein A, and Mcm2p at replication origins controlled by S-phase cyclin-dependent kinases and Cdc7p-Dbf4p kinase.

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Journal:  Mol Cell Biol       Date:  2000-05       Impact factor: 4.272

2.  Requirement of Cyclin/Cdk2 and protein phosphatase 1 activity for chromatin assembly factor 1-dependent chromatin assembly during DNA synthesis.

Authors:  C Keller; T Krude
Journal:  J Biol Chem       Date:  2000-11-10       Impact factor: 5.157

3.  The RCAF complex mediates chromatin assembly during DNA replication and repair.

Authors:  J K Tyler; C R Adams; S R Chen; R Kobayashi; R T Kamakaka; J T Kadonaga
Journal:  Nature       Date:  1999-12-02       Impact factor: 49.962

4.  Hierarchy of S-phase-promoting factors: yeast Dbf4-Cdc7 kinase requires prior S-phase cyclin-dependent kinase activation.

Authors:  R Nougarède; F Della Seta; P Zarzov; E Schwob
Journal:  Mol Cell Biol       Date:  2000-06       Impact factor: 4.272

5.  Cdc7p-Dbf4p kinase binds to chromatin during S phase and is regulated by both the APC and the RAD53 checkpoint pathway.

Authors:  M Weinreich; B Stillman
Journal:  EMBO J       Date:  1999-10-01       Impact factor: 11.598

6.  The yeast Cac1 protein is required for the stable inheritance of transcriptionally repressed chromatin at telomeres.

Authors:  E K Monson; D de Bruin; V A Zakian
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-25       Impact factor: 11.205

7.  Replication-dependent marking of DNA by PCNA facilitates CAF-1-coupled inheritance of chromatin.

Authors:  K Shibahara; B Stillman
Journal:  Cell       Date:  1999-02-19       Impact factor: 41.582

8.  Persistent initiation of DNA replication and chromatin-bound MCM proteins during the cell cycle in cdc6 mutants.

Authors:  C Liang; B Stillman
Journal:  Genes Dev       Date:  1997-12-15       Impact factor: 11.361

9.  Human Cdc7-related kinase complex. In vitro phosphorylation of MCM by concerted actions of Cdks and Cdc7 and that of a criticial threonine residue of Cdc7 bY Cdks.

Authors:  H Masai; E Matsui; Z You; Y Ishimi; K Tamai; K Arai
Journal:  J Biol Chem       Date:  2000-09-15       Impact factor: 5.157

10.  Hir proteins are required for position-dependent gene silencing in Saccharomyces cerevisiae in the absence of chromatin assembly factor I.

Authors:  P D Kaufman; J L Cohen; M A Osley
Journal:  Mol Cell Biol       Date:  1998-08       Impact factor: 4.272

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  12 in total

1.  Machine Learning of Global Phosphoproteomic Profiles Enables Discrimination of Direct versus Indirect Kinase Substrates.

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Journal:  Mol Cell Proteomics       Date:  2017-03-06       Impact factor: 5.911

2.  Cell division cycle 7 kinase is a negative regulator of cell-mediated collagen degradation.

Authors:  Michael J Podolsky; Deepti Gupta; Arnold Ha; Ryan Ta; Amin Khalifeh-Soltani; William McKleroy; Ritwik Datta; Dean Sheppard; Kamran Atabai
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3.  Dysfunctional CAF-I reveals its role in cell cycle progression and differential regulation of gene silencing.

Authors:  Hollie Rowlands; Kholoud Shaban; Ashley Cheng; Barret Foster; Krassimir Yankulov
Journal:  Cell Cycle       Date:  2019-09-29       Impact factor: 4.534

4.  RRM3 regulates epigenetic conversions in Saccharomyces cerevisiae in conjunction with Chromatin Assembly Factor I.

Authors:  Brandon Wyse; Roxanne Oshidari; Hollie Rowlands; Sanna Abbasi; Krassimir Yankulov
Journal:  Nucleus       Date:  2016-07-03       Impact factor: 4.197

5.  Modulation of Gene Silencing by Cdc7p via H4 K16 Acetylation and Phosphorylation of Chromatin Assembly Factor CAF-1 in Saccharomyces cerevisiae.

Authors:  Tiffany J Young; Yi Cui; Joseph Irudayaraj; Ann L Kirchmaier
Journal:  Genetics       Date:  2019-02-06       Impact factor: 4.562

Review 6.  DDK: The Outsourced Kinase of Chromosome Maintenance.

Authors:  Peter J Gillespie; J Julian Blow
Journal:  Biology (Basel)       Date:  2022-06-07

Review 7.  Dbf4-Dependent Kinase: DDK-ated to post-initiation events in DNA replication.

Authors:  Andrew Dolson; Safia Mahabub Sauty; Kholoud Shaban; Krassimir Yankulov
Journal:  Cell Cycle       Date:  2021-10-18       Impact factor: 5.173

8.  DNA-mediated association of two histone-bound complexes of yeast Chromatin Assembly Factor-1 (CAF-1) drives tetrasome assembly in the wake of DNA replication.

Authors:  Francesca Mattiroli; Yajie Gu; Tejas Yadav; Jeremy L Balsbaugh; Michael R Harris; Eileen S Findlay; Yang Liu; Catherine A Radebaugh; Laurie A Stargell; Natalie G Ahn; Iestyn Whitehouse; Karolin Luger
Journal:  Elife       Date:  2017-03-18       Impact factor: 8.140

Review 9.  Forks on the Run: Can the Stalling of DNA Replication Promote Epigenetic Changes?

Authors:  Hollie Rowlands; Piriththiv Dhavarasa; Ashley Cheng; Krassimir Yankulov
Journal:  Front Genet       Date:  2017-06-22       Impact factor: 4.599

Review 10.  Mechanistic insights into histone deposition and nucleosome assembly by the chromatin assembly factor-1.

Authors:  Paul V Sauer; Yajie Gu; Wallace H Liu; Francesca Mattiroli; Daniel Panne; Karolin Luger; Mair Ea Churchill
Journal:  Nucleic Acids Res       Date:  2018-11-02       Impact factor: 16.971

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