Literature DB >> 25590674

Implementation and evaluation of data analysis strategies for time-resolved optical spectroscopy.

Chavdar Slavov1, Helvi Hartmann, Josef Wachtveitl.   

Abstract

Time-resolved optical spectroscopy plays a key role in illuminating the mechanisms of many fundamental processes in physics, chemistry, and biology. However, to extract the essential information from the highly complex time-resolved data, advanced data analysis techniques are required. Here we present the implementation strategies and the evaluation of the familiar global lifetime and target analysis as well as the not so widely adopted lifetime distribution analysis (LDA). Furthermore, we demonstrate the implementation of analysis strategies dealing with a number of artifacts inherently present in data from ultrafast optical experiments. The focus of the work is placed on LDA as it allows invaluable exploration depth of the kinetic information contained in the experimental data. We establish a clear regularization procedure for the use of LDA in ultrafast optical spectroscopy and evaluate the performance of a number of factors that play a role in the reliable reconstruction of lifetime distributions. Our results show that the optimal regularization factor can be determined well with the L-curve and the generalized cross-validation techniques. Moreover, the performance evaluations indicate that the most efficient regularization norm is the identity matrix. The analytical procedures described in this work can be readily implemented and used for the analysis of any time-resolved data.

Mesh:

Year:  2015        PMID: 25590674     DOI: 10.1021/ac504348h

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  17 in total

1.  The interplay between chromophore and protein determines the extended excited state dynamics in a single-domain phytochrome.

Authors:  Chavdar Slavov; Tobias Fischer; Avishai Barnoy; Heewhan Shin; Aditya G Rao; Christian Wiebeler; Xiaoli Zeng; Yafang Sun; Qianzhao Xu; Alexander Gutt; Kai-Hong Zhao; Wolfgang Gärtner; Xiaojing Yang; Igor Schapiro; Josef Wachtveitl
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-26       Impact factor: 11.205

2.  Coumarin-diene photoswitches for rapid and efficient isomerization with visible light.

Authors:  Matthew T Richers; Dinh Du Tran; Josef Wachtveitl; Graham C R Ellis-Davies
Journal:  Chem Commun (Camb)       Date:  2018-05-10       Impact factor: 6.222

3.  From Gene to Function: Cell-Free Electrophysiological and Optical Analysis of Ion Pumps in Nanodiscs.

Authors:  Erik Henrich; Janina Sörmann; Peter Eberhardt; Oliver Peetz; Julija Mezhyrova; Nina Morgner; Klaus Fendler; Volker Dötsch; Josef Wachtveitl; Frank Bernhard; Christian Bamann
Journal:  Biophys J       Date:  2017-04-24       Impact factor: 4.033

4.  Chiral control of spin-crossover dynamics in Fe(II) complexes.

Authors:  Malte Oppermann; Francesco Zinna; Jérôme Lacour; Majed Chergui
Journal:  Nat Chem       Date:  2022-05-26       Impact factor: 24.427

5.  Influence of the PHY domain on the ms-photoconversion dynamics of a knotless phytochrome.

Authors:  Tobias Fischer; Lisa Köhler; Tanja Ott; Chen Song; Josef Wachtveitl; Chavdar Slavov
Journal:  Photochem Photobiol Sci       Date:  2022-06-10       Impact factor: 4.328

6.  Influence of Arrestin on the Photodecay of Bovine Rhodopsin.

Authors:  Deep Chatterjee; Carl Elias Eckert; Chavdar Slavov; Krishna Saxena; Boris Fürtig; Charles R Sanders; Vsevolod V Gurevich; Josef Wachtveitl; Harald Schwalbe
Journal:  Angew Chem Int Ed Engl       Date:  2015-09-18       Impact factor: 15.336

7.  Femtosecond visible transient absorption spectroscopy of chlorophyll-f-containing photosystem II.

Authors:  Noura Zamzam; Rafal Rakowski; Marius Kaucikas; Gabriel Dorlhiac; Sefania Viola; Dennis J Nürnberg; Andrea Fantuzzi; A William Rutherford; Jasper J van Thor
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-31       Impact factor: 11.205

8.  Temperature Dependence of the Krokinobacter rhodopsin 2 Kinetics.

Authors:  Peter Eberhardt; Chavdar Slavov; Janina Sörmann; Christian Bamann; Markus Braun; Josef Wachtveitl
Journal:  Biophys J       Date:  2020-12-19       Impact factor: 4.033

9.  Excitonic structure and charge separation in the heliobacterial reaction center probed by multispectral multidimensional spectroscopy.

Authors:  Yin Song; Riley Sechrist; Hoang H Nguyen; William Johnson; Darius Abramavicius; Kevin E Redding; Jennifer P Ogilvie
Journal:  Nat Commun       Date:  2021-05-14       Impact factor: 14.919

10.  Enhanced generation and anisotropic Coulomb scattering of hot electrons in an ultra-broadband plasmonic nanopatch metasurface.

Authors:  Matthew E Sykes; Jon W Stewart; Gleb M Akselrod; Xiang-Tian Kong; Zhiming Wang; David J Gosztola; Alex B F Martinson; Daniel Rosenmann; Maiken H Mikkelsen; Alexander O Govorov; Gary P Wiederrecht
Journal:  Nat Commun       Date:  2017-10-17       Impact factor: 14.919

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