Literature DB >> 25577151

International standardization and classification of human papillomavirus types.

Davit Bzhalava1, Carina Eklund1, Joakim Dillner2.   

Abstract

Established Human Papillomavirus (HPV) types, up to HPV202, belong to 49 species in five genera. International standardization in classification and quality standards for HPV type designation and detection is ensured by the International HPV Reference Center. The center i) receives clones of potentially novel HPV types, re-clones and re-sequences them. If confirmed, an HPV type number is assigned and posted on www.hpvcenter.se. ii) distributes reference clone samples, for academic research, under Material Transfer Agreements agreed with the originator. iii) provides preliminary checking of whether new sequences represent novel types iv) issues international proficiency panels for HPV genotyping. The rate of HPV type discovery is increasing, probably because of metagenomic sequencing. γ-genus today contains 79HPV types and 27 species, surpassing ∝ and β genera with 65 and 51HPV types, respectively. Regular issuing of proficiency panels based on HPV reference clones has resulted in global improvement of HPV genotyping services.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Human papillomavirus

Mesh:

Year:  2015        PMID: 25577151     DOI: 10.1016/j.virol.2014.12.028

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  80 in total

1.  Strengthening the Interaction of the Virology Community with the International Committee on Taxonomy of Viruses (ICTV) by Linking Virus Names and Their Abbreviations to Virus Species.

Authors:  Charles H Calisher; Thomas Briese; J Rodney Brister; Rémi N Charrel; Ralf Dürrwald; Hideki Ebihara; Charles F Fulhorst; George Fú Gāo; Martin H Groschup; Andrew D Haddow; Timothy H Hyndman; Sandra Junglen; Boris Klempa; Jonas Klingström; Andrew M Kropinski; Mart Krupovic; A Desiree LaBeaud; Piet Maes; Norbert Nowotny; Márcio Roberto Teixeira Nunes; Susan L Payne; Sheli R Radoshitzky; Dennis Rubbenstroth; Sead Sabanadzovic; Takahide Sasaya; Mark D Stenglein; Arvind Varsani; Victoria Wahl; Scott C Weaver; Francisco Murilo Zerbini; Nikos Vasilakis; Jens H Kuhn
Journal:  Syst Biol       Date:  2019-09-01       Impact factor: 15.683

2.  HPViewer: sensitive and specific genotyping of human papillomavirus in metagenomic DNA.

Authors:  Yuhan Hao; Liying Yang; Antonio Galvao Neto; Milan R Amin; Dervla Kelly; Stuart M Brown; Ryan C Branski; Zhiheng Pei
Journal:  Bioinformatics       Date:  2018-06-15       Impact factor: 6.937

3.  Within-Host Variations of Human Papillomavirus Reveal APOBEC Signature Mutagenesis in the Viral Genome.

Authors:  Yusuke Hirose; Mamiko Onuki; Yuri Tenjimbayashi; Seiichiro Mori; Yoshiyuki Ishii; Takamasa Takeuchi; Nobutaka Tasaka; Toyomi Satoh; Tohru Morisada; Takashi Iwata; Shingo Miyamoto; Koji Matsumoto; Akihiko Sekizawa; Iwao Kukimoto
Journal:  J Virol       Date:  2018-05-29       Impact factor: 5.103

4.  Extracellular Conformational Changes in the Capsid of Human Papillomaviruses Contribute to Asynchronous Uptake into Host Cells.

Authors:  Miriam Becker; Lilo Greune; M Alexander Schmidt; Mario Schelhaas
Journal:  J Virol       Date:  2018-05-14       Impact factor: 5.103

Review 5.  Model systems to study the life cycle of human papillomaviruses and HPV-associated cancers.

Authors:  Louise T Chow
Journal:  Virol Sin       Date:  2015-04-23       Impact factor: 4.327

Review 6.  Utility of high-throughput DNA sequencing in the study of the human papillomaviruses.

Authors:  Noé Escobar-Escamilla; José Ernesto Ramírez-González; Graciela Castro-Escarpulli; José Alberto Díaz-Quiñonez
Journal:  Virus Genes       Date:  2017-12-27       Impact factor: 2.332

Review 7.  Current and Emerging Molecular Tests for Human Papillomavirus-Related Neoplasia in the Genomic Era.

Authors:  Sixto M Leal; Margaret L Gulley
Journal:  J Mol Diagn       Date:  2017-03-18       Impact factor: 5.568

8.  High-risk oncogenic HPV genotype infection associates with increased immune activation and T cell exhaustion in ART-suppressed HIV-1-infected women.

Authors:  Emmanouil Papasavvas; Lea F Surrey; Deborah K Glencross; Livio Azzoni; Jocelin Joseph; Tanvier Omar; Michael D Feldman; Anna-Lise Williamson; Maureen Siminya; Avril Swarts; Xiangfan Yin; Qin Liu; Cynthia Firnhaber; Luis J Montaner
Journal:  Oncoimmunology       Date:  2016-01-19       Impact factor: 8.110

9.  Validation of a standardized extraction method for formalin-fixed paraffin-embedded tissue samples.

Authors:  Camilla Lagheden; Carina Eklund; Sara Nordqvist Kleppe; Elizabeth R Unger; Joakim Dillner; Karin Sundström
Journal:  J Clin Virol       Date:  2016-04-27       Impact factor: 3.168

10.  Detection of human papillomaviruses in paired healthy skin and actinic keratosis by next generation sequencing.

Authors:  Luisa Galati; Rosario Nicola Brancaccio; Alexis Robitaille; Cyrille Cuenin; Fabiola Luzi; Gianna Fiorucci; Maria Vincenza Chiantore; Nadia Marascio; Giovanni Matera; Maria Carla Liberto; Maria Gabriella Donà; Paola Di Bonito; Tarik Gheit; Massimo Tommasino
Journal:  Papillomavirus Res       Date:  2020-03-25
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