Literature DB >> 25567374

Chromodomain helicase DNA-binding proteins in stem cells and human developmental diseases.

Joseph A Micucci1, Ethan D Sperry, Donna M Martin.   

Abstract

Dynamic regulation of gene expression is vital for proper cellular development and maintenance of differentiated states. Over the past 20 years, chromatin remodeling and epigenetic modifications of histones have emerged as key controllers of rapid reversible changes in gene expression. Mutations in genes encoding enzymes that modify chromatin have also been identified in a variety of human neurodevelopmental disorders, ranging from isolated intellectual disability and autism spectrum disorder to multiple congenital anomaly conditions that affect major organ systems and cause severe morbidity and mortality. In this study, we review recent evidence that chromodomain helicase DNA-binding (CHD) proteins regulate stem cell proliferation, fate, and differentiation in a wide variety of tissues and organs. We also highlight known roles of CHD proteins in human developmental diseases and present current unanswered questions about the pleiotropic effects of CHD protein complexes, their genetic targets, nucleosome sliding functions, and enzymatic effects in cells and tissues.

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Year:  2015        PMID: 25567374      PMCID: PMC4390162          DOI: 10.1089/scd.2014.0544

Source DB:  PubMed          Journal:  Stem Cells Dev        ISSN: 1547-3287            Impact factor:   3.272


  101 in total

Review 1.  Role of CHD5 in human cancers: 10 years later.

Authors:  Venkatadri Kolla; Tiangang Zhuang; Mayumi Higashi; Koumudi Naraparaju; Garrett M Brodeur
Journal:  Cancer Res       Date:  2014-01-13       Impact factor: 12.701

Review 2.  CHD7 mutations and CHARGE syndrome: the clinical implications of an expanding phenotype.

Authors:  J E H Bergman; N Janssen; L H Hoefsloot; M C J Jongmans; R M W Hofstra; C M A van Ravenswaaij-Arts
Journal:  J Med Genet       Date:  2011-03-04       Impact factor: 6.318

Review 3.  Genetic regulation of bone mass and susceptibility to osteoporosis.

Authors:  Stuart H Ralston; Benoit de Crombrugghe
Journal:  Genes Dev       Date:  2006-09-15       Impact factor: 11.361

Review 4.  SWI2/SNF2 and related proteins: ATP-driven motors that disrupt protein-DNA interactions?

Authors:  M J Pazin; J T Kadonaga
Journal:  Cell       Date:  1997-03-21       Impact factor: 41.582

5.  Five SWI/SNF gene products are components of a large multisubunit complex required for transcriptional enhancement.

Authors:  C L Peterson; A Dingwall; M P Scott
Journal:  Proc Natl Acad Sci U S A       Date:  1994-04-12       Impact factor: 11.205

6.  Molecular analysis of a major antigenic region of the 240-kD protein of Mi-2 autoantigen.

Authors:  Q Ge; D S Nilasena; C A O'Brien; M B Frank; I N Targoff
Journal:  J Clin Invest       Date:  1995-10       Impact factor: 14.808

7.  Sox2 cooperates with Chd7 to regulate genes that are mutated in human syndromes.

Authors:  Erik Engelen; Umut Akinci; Jan Christian Bryne; Jun Hou; Cristina Gontan; Maaike Moen; Dorota Szumska; Christel Kockx; Wilfred van Ijcken; Dick H W Dekkers; Jeroen Demmers; Erik-Jan Rijkers; Shoumo Bhattacharya; Sjaak Philipsen; Larysa H Pevny; Frank G Grosveld; Robbert J Rottier; Boris Lenhard; Raymond A Poot
Journal:  Nat Genet       Date:  2011-05-01       Impact factor: 38.330

8.  Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders.

Authors:  Brian J O'Roak; Laura Vives; Wenqing Fu; Jarrett D Egertson; Ian B Stanaway; Ian G Phelps; Gemma Carvill; Akash Kumar; Choli Lee; Katy Ankenman; Jeff Munson; Joseph B Hiatt; Emily H Turner; Roie Levy; Diana R O'Day; Niklas Krumm; Bradley P Coe; Beth K Martin; Elhanan Borenstein; Deborah A Nickerson; Heather C Mefford; Dan Doherty; Joshua M Akey; Raphael Bernier; Evan E Eichler; Jay Shendure
Journal:  Science       Date:  2012-11-15       Impact factor: 47.728

9.  Role of chromodomain helicase DNA-binding protein 2 in DNA damage response signaling and tumorigenesis.

Authors:  P Nagarajan; T M Onami; S Rajagopalan; S Kania; R Donnell; S Venkatachalam
Journal:  Oncogene       Date:  2009-01-12       Impact factor: 9.867

10.  De novo mutations in epileptic encephalopathies.

Authors:  Andrew S Allen; Samuel F Berkovic; Patrick Cossette; Norman Delanty; Dennis Dlugos; Evan E Eichler; Michael P Epstein; Tracy Glauser; David B Goldstein; Yujun Han; Erin L Heinzen; Yuki Hitomi; Katherine B Howell; Michael R Johnson; Ruben Kuzniecky; Daniel H Lowenstein; Yi-Fan Lu; Maura R Z Madou; Anthony G Marson; Heather C Mefford; Sahar Esmaeeli Nieh; Terence J O'Brien; Ruth Ottman; Slavé Petrovski; Annapurna Poduri; Elizabeth K Ruzzo; Ingrid E Scheffer; Elliott H Sherr; Christopher J Yuskaitis; Bassel Abou-Khalil; Brian K Alldredge; Jocelyn F Bautista; Samuel F Berkovic; Alex Boro; Gregory D Cascino; Damian Consalvo; Patricia Crumrine; Orrin Devinsky; Dennis Dlugos; Michael P Epstein; Miguel Fiol; Nathan B Fountain; Jacqueline French; Daniel Friedman; Eric B Geller; Tracy Glauser; Simon Glynn; Sheryl R Haut; Jean Hayward; Sandra L Helmers; Sucheta Joshi; Andres Kanner; Heidi E Kirsch; Robert C Knowlton; Eric H Kossoff; Rachel Kuperman; Ruben Kuzniecky; Daniel H Lowenstein; Shannon M McGuire; Paul V Motika; Edward J Novotny; Ruth Ottman; Juliann M Paolicchi; Jack M Parent; Kristen Park; Annapurna Poduri; Ingrid E Scheffer; Renée A Shellhaas; Elliott H Sherr; Jerry J Shih; Rani Singh; Joseph Sirven; Michael C Smith; Joseph Sullivan; Liu Lin Thio; Anu Venkat; Eileen P G Vining; Gretchen K Von Allmen; Judith L Weisenberg; Peter Widdess-Walsh; Melodie R Winawer
Journal:  Nature       Date:  2013-08-11       Impact factor: 49.962

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  17 in total

1.  A functional assay to study the pathogenicity of CHD7 protein variants encountered in CHARGE syndrome patients.

Authors:  Gara Samara Brajadenta; Frédéric Bilan; Brigitte Gilbert-Dussardier; Alain Kitzis; Vincent Thoreau
Journal:  Eur J Hum Genet       Date:  2019-07-09       Impact factor: 4.246

2.  Proteomic Analysis of the Hippocampus in Mouse Models of Trigeminal Neuralgia and Inescapable Shock-Induced Depression.

Authors:  Qing-Huan Guo; Qing-He Tong; Ning Lu; Hong Cao; Liu Yang; Yu-Qiu Zhang
Journal:  Neurosci Bull       Date:  2017-04-19       Impact factor: 5.203

3.  CHD7 regulates cardiovascular development through ATP-dependent and -independent activities.

Authors:  Shun Yan; Rassarin Thienthanasit; Dongquan Chen; Erik Engelen; Joanna Brühl; David K Crossman; Robert Kesterson; Qin Wang; Karim Bouazoune; Kai Jiao
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-30       Impact factor: 11.205

4.  Comprehensive analysis of the expression, prognosis, and immune infiltrates for CHDs in human lung cancer.

Authors:  Yang Lv; Wenchu Lin
Journal:  Discov Oncol       Date:  2022-04-25

5.  A Functional Switch of NuRD Chromatin Remodeling Complex Subunits Regulates Mouse Cortical Development.

Authors:  Justyna Nitarska; Jacob G Smith; William T Sherlock; Michele M G Hillege; Alexi Nott; William D Barshop; Ajay A Vashisht; James A Wohlschlegel; Richard Mitter; Antonella Riccio
Journal:  Cell Rep       Date:  2016-11-01       Impact factor: 9.423

Review 6.  Chromatin remodelling and epigenetic state regulation by non-coding RNAs in the diseased heart.

Authors:  F De Majo; M Calore
Journal:  Noncoding RNA Res       Date:  2018-03-02

Review 7.  Chromatin Remodeling Complex NuRD in Neurodevelopment and Neurodevelopmental Disorders.

Authors:  Anke Hoffmann; Dietmar Spengler
Journal:  Front Genet       Date:  2019-07-24       Impact factor: 4.599

8.  A novel de novo POGZ mutation in a patient with intellectual disability.

Authors:  Bo Tan; Yongyi Zou; Yue Zhang; Rui Zhang; Jianjun Ou; Yidong Shen; Jingping Zhao; Xiaomei Luo; Jing Guo; Lanlan Zeng; Yiqiao Hu; Yu Zheng; Qian Pan; Desheng Liang; Lingqian Wu
Journal:  J Hum Genet       Date:  2016-01-14       Impact factor: 3.755

9.  CHD8 dosage regulates transcription in pluripotency and early murine neural differentiation.

Authors:  Sabina Sood; Christopher M Weber; H Courtney Hodges; Andrey Krokhotin; Aryaman Shalizi; Gerald R Crabtree
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-24       Impact factor: 12.779

Review 10.  Epigenetics and inheritance of phenotype variation in livestock.

Authors:  Kostas A Triantaphyllopoulos; Ioannis Ikonomopoulos; Andrew J Bannister
Journal:  Epigenetics Chromatin       Date:  2016-07-21       Impact factor: 4.954

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