Literature DB >> 25565329

The influence of the microscope lamp filament colour temperature on the process of digital images of histological slides acquisition standardization.

Anna Korzynska, Lukasz Roszkowiak, Dorota Pijanowska, Wojciech Kozlowski, Tomasz Markiewicz.   

Abstract

BACKGROUND: The aim of this study is to compare the digital images of the tissue biopsy captured with optical microscope using bright field technique under various light conditions. The range of colour's variation in immunohistochemically stained with 3,3'-Diaminobenzidine and Haematoxylin tissue samples is immense and coming from various sources. One of them is inadequate setting of camera's white balance to microscope's light colour temperature. Although this type of error can be easily handled during the stage of image acquisition, it can be eliminated with use of colour adjustment algorithms. The examination of the dependence of colour variation from microscope's light temperature and settings of the camera is done as an introductory research to the process of automatic colour standardization.
METHODS: Six fields of view with empty space among the tissue samples have been selected for analysis. Each field of view has been acquired 225 times with various microscope light temperature and camera white balance settings. The fourteen randomly chosen images have been corrected and compared, with the reference image, by the following methods: Mean Square Error, Structural SIMilarity and visual assessment of viewer.
RESULTS: For two types of backgrounds and two types of objects, the statistical image descriptors: range, median, mean and its standard deviation of chromaticity on a and b channels from CIELab colour space, and luminance L, and local colour variability for objects' specific area have been calculated. The results have been averaged for 6 images acquired in the same light conditions and camera settings for each sample.
CONCLUSIONS: The analysis of the results leads to the following conclusions: (1) the images collected with white balance setting adjusted to light colour temperature clusters in certain area of chromatic space, (2) the process of white balance correction for images collected with white balance camera settings not matched to the light temperature moves image descriptors into proper chromatic space but simultaneously the value of luminance changes. So the process of the image unification in a sense of colour fidelity can be solved in separate introductory stage before the automatic image analysis.

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Year:  2014        PMID: 25565329      PMCID: PMC4305971          DOI: 10.1186/1746-1596-9-S1-S13

Source DB:  PubMed          Journal:  Diagn Pathol        ISSN: 1746-1596            Impact factor:   2.644


  8 in total

1.  Quantitative phase-amplitude microscopy I: optical microscopy.

Authors:  E D Barone-Nugent; A Barty; K A Nugent
Journal:  J Microsc       Date:  2002-06       Impact factor: 1.758

2.  Image quality assessment: from error visibility to structural similarity.

Authors:  Zhou Wang; Alan Conrad Bovik; Hamid Rahim Sheikh; Eero P Simoncelli
Journal:  IEEE Trans Image Process       Date:  2004-04       Impact factor: 10.856

3.  Quality evaluation of microscopy and scanned histological images for diagnostic purposes.

Authors:  R Redondo; G Bueno; G Cristóbal; J Vidal; O Déniz; M García-Rojo; C Murillo; F Relea; J González
Journal:  Micron       Date:  2011-10-06       Impact factor: 2.251

4.  JPEG2000 for automated quantification of immunohistochemically stained cell nuclei: a comparative study with standard JPEG format.

Authors:  Marylène Lejeune; Carlos López; Ramón Bosch; Anna Korzyńska; Maria-Teresa Salvadó; Marcial García-Rojo; Urszula Neuman; Łukasz Witkowski; Jordi Baucells; Joaquín Jaén
Journal:  Virchows Arch       Date:  2010-11-18       Impact factor: 4.064

5.  A no-reference objective image sharpness metric based on the notion of just noticeable blur (JNB).

Authors:  Rony Ferzli; Lina J Karam
Journal:  IEEE Trans Image Process       Date:  2009-04       Impact factor: 10.856

Review 6.  Pathology imaging informatics for quantitative analysis of whole-slide images.

Authors:  Sonal Kothari; John H Phan; Todd H Stokes; May D Wang
Journal:  J Am Med Inform Assoc       Date:  2013-08-19       Impact factor: 4.497

7.  Automated classification of immunostaining patterns in breast tissue from the human protein atlas.

Authors:  Issac Niwas Swamidoss; Andreas Kårsnäs; Virginie Uhlmann; Palanisamy Ponnusamy; Caroline Kampf; Martin Simonsson; Carolina Wählby; Robin Strand
Journal:  J Pathol Inform       Date:  2013-03-30

8.  Optimization of a widefield structured illumination microscope for non-destructive assessment and quantification of nuclear features in tumor margins of a primary mouse model of sarcoma.

Authors:  Henry L Fu; Jenna L Mueller; Melodi P Javid; Jeffrey K Mito; David G Kirsch; Nimmi Ramanujam; J Quincy Brown
Journal:  PLoS One       Date:  2013-07-23       Impact factor: 3.240

  8 in total
  1 in total

1.  PATMA: parser of archival tissue microarray.

Authors:  Lukasz Roszkowiak; Carlos Lopez
Journal:  PeerJ       Date:  2016-12-01       Impact factor: 2.984

  1 in total

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