Literature DB >> 25563195

The methylation of a panel of genes differentiates low-grade from high-grade gliomas.

Aleksandra Majchrzak-Celińska1, Jarosław Paluszczak, Marlena Szalata, Anna-Maria Barciszewska, Stanisław Nowak, Robert Kleszcz, Adam Sherba, Wanda Baer-Dubowska.   

Abstract

Epigenetic changes play an important role in the pathogenesis of gliomas and have the potential to become clinically useful biomarkers. The aim of this study was the evaluation of the profile of promoter methylation of 13 genes selected based on their anticipated diagnostic and/or prognostic value. Methylation-specific PCR (MSP) was used to assess the methylation status of MGMT, ERCC1, hMLH1, ATM, CDKN2B (p15INK4B), p14ARF, CDKN2A (p16INK4A), RASSF1A, RUNX3, GATA6, NDRG2, PTEN, and RARβ in a subset of 95 gliomas of different grades. Additionally, the methylation status of MGMT and NDRG2 was analyzed using pyrosequencing (PSQ). The results revealed that the methylation index of individual glioma patients correlates with World Health Organization (WHO) tumor grade and patient's age. RASSF1A, RUNX3, GATA6, and MGMT were most frequently methylated, whereas the INK4B-ARF-INK4A locus, PTEN, RARβ, and ATM were methylated to a lesser extent. ERCC1, hMLH1, and NDRG2 were unmethylated. RUNX3 methylation correlated with WHO tumor grade and patient's age. PSQ confirmed significantly higher methylation levels of MGMT and NDRG2 as compared with normal, non-cancerous brain tissue. To conclude, DNA methylation of a whole panel of selected genes can serve as a tool for glioma aggressiveness prediction.

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Year:  2015        PMID: 25563195     DOI: 10.1007/s13277-014-3025-3

Source DB:  PubMed          Journal:  Tumour Biol        ISSN: 1010-4283


  38 in total

1.  Methylation of the ATM promoter in glioma cells alters ionizing radiation sensitivity.

Authors:  Kanaklata Roy; Lilin Wang; G Mike Makrigiorgos; Brendan D Price
Journal:  Biochem Biophys Res Commun       Date:  2006-04-19       Impact factor: 3.575

2.  Decreased expression of NDRG2 is related to poor overall survival in patients with glioma.

Authors:  Wei Li; Dake Chu; Xiaodan Chu; Fanhua Meng; Dun Wei; Haiping Li; Boqian Sun
Journal:  J Clin Neurosci       Date:  2011-08-26       Impact factor: 1.961

Review 3.  [Methylation status of RARbeta gene promoter in low and high grade cerebral glioma. Comparison with normal tissue. Immuno-histochemical study of nuclear RARbeta expression in low and high grade cerebral glioma cells. Comparison with normal cells. 48 tumors].

Authors:  O Klein; Y Grignon; T Civit; J Auque; J C Marchal
Journal:  Neurochirurgie       Date:  2005-09       Impact factor: 1.553

4.  PTEN promoter methylation and activation of the PI3K/Akt/mTOR pathway in pediatric gliomas and influence on clinical outcome.

Authors:  Sabine Mueller; Joanna Phillips; Arzu Onar-Thomas; Eloy Romero; Shichun Zheng; John K Wiencke; Sean M McBride; Cynthia Cowdrey; Michael D Prados; William A Weiss; Mitchel S Berger; Nalin Gupta; Daphne A Haas-Kogan
Journal:  Neuro Oncol       Date:  2012-06-29       Impact factor: 12.300

5.  p14ARF promoter region methylation as a marker for gliomas diagnosis.

Authors:  Jie He; Jian-bing Qiao; Haiqing Zhu
Journal:  Med Oncol       Date:  2010-08-17       Impact factor: 3.064

6.  Role of ERCC1 promoter hypermethylation in drug resistance to cisplatin in human gliomas.

Authors:  Hua-Yun Chen; Cui-Jie Shao; Fu-Rong Chen; Aij-Lie Kwan; Zhong-Ping Chen
Journal:  Int J Cancer       Date:  2010-04-15       Impact factor: 7.396

7.  Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands.

Authors:  J G Herman; J R Graff; S Myöhänen; B D Nelkin; S B Baylin
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-03       Impact factor: 11.205

Review 8.  Correlation of O6-methylguanine methyltransferase (MGMT) promoter methylation with clinical outcomes in glioblastoma and clinical strategies to modulate MGMT activity.

Authors:  Monika E Hegi; Lili Liu; James G Herman; Roger Stupp; Wolfgang Wick; Michael Weller; Minesh P Mehta; Mark R Gilbert
Journal:  J Clin Oncol       Date:  2008-09-01       Impact factor: 44.544

9.  MGMT, GATA6, CD81, DR4, and CASP8 gene promoter methylation in glioblastoma.

Authors:  Daina Skiriute; Paulina Vaitkiene; Viktoras Saferis; Virginija Asmoniene; Kestutis Skauminas; Vytenis Pranas Deltuva; Arimantas Tamasauskas
Journal:  BMC Cancer       Date:  2012-06-06       Impact factor: 4.430

10.  Detection of MGMT, RASSF1A, p15INK4B, and p14ARF promoter methylation in circulating tumor-derived DNA of central nervous system cancer patients.

Authors:  Aleksandra Majchrzak-Celińska; Jarosław Paluszczak; Robert Kleszcz; Marta Magiera; Anna-Maria Barciszewska; Stanisław Nowak; Wanda Baer-Dubowska
Journal:  J Appl Genet       Date:  2013-05-10       Impact factor: 3.240

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  15 in total

1.  Gene promoter hypermethylation is found in sentinel lymph nodes of breast cancer patients, in samples identified as positive by one-step nucleic acid amplification of cytokeratin 19 mRNA.

Authors:  E Martín-Sánchez; E Pernaut-Leza; S Mendaza; A Cordoba; F Vicente-Garcia; I Monreal-Santesteban; J Pérez Vizcaino; M J Díaz De Cerio; N Perez-Janices; I Blanco-Luquin; D Escors; A Ulazia-Garmendia; D Guerrero-Setas
Journal:  Virchows Arch       Date:  2016-04-21       Impact factor: 4.064

2.  DNA methylation analysis of benign and atypical meningiomas: correlation between RUNX3 methylation and WHO grade.

Authors:  Aleksandra Majchrzak-Celińska; Jarosław Paluszczak; Marlena Szalata; Anna-Maria Barciszewska; Stanisław Nowak; Wanda Baer-Dubowska
Journal:  J Cancer Res Clin Oncol       Date:  2015-02-04       Impact factor: 4.553

3.  Testin (TES) as a candidate tumour suppressor and prognostic marker in human astrocytoma.

Authors:  Giedrius Steponaitis; Arunas Kazlauskas; Daina Skiriute; Indre Valiulyte; Kestutis Skauminas; Arimantas Tamasauskas; Paulina Vaitkiene
Journal:  Oncol Lett       Date:  2016-09-01       Impact factor: 2.967

4.  Evaluation of Promoter Methylation of RASSF1A and ATM in Peripheral Blood of Breast Cancer Patients and Healthy Control Individuals.

Authors:  Xue Cao; Qiuqiong Tang; Tim Holland-Letz; Melanie Gündert; Katarina Cuk; Sarah Schott; Jörg Heil; Michael Golatta; Christof Sohn; Andreas Schneeweiss; Barbara Burwinkel
Journal:  Int J Mol Sci       Date:  2018-03-19       Impact factor: 6.208

5.  Oncosuppressive Role of RUNX3 in Human Astrocytomas.

Authors:  Giedrius Steponaitis; Arunas Kazlauskas; Paulina Vaitkienė; Vytenis P Deltuva; Mykolas Mikuciunas; Daina Skiriutė
Journal:  J Oncol       Date:  2019-08-05       Impact factor: 4.375

6.  Methylation profiling in promoter sequences of ATM and CDKN2A (p14ARF/p16INK4a ) genes in blood and cfDNA from women with impalpable breast lesions.

Authors:  Lucas Delmonico; Mauricio Augusto Silva Magalhães Costa; Romario José Gomes; Pâmella De Oliveira Vieira; Ana Beatriz Passos Da Silva; Marcia V Fournier; Luciano Rios Scherrer; Carolina Maria De Azevedo; Maria Helena Faria Ornellas; Gilda Alves
Journal:  Oncol Lett       Date:  2020-02-10       Impact factor: 3.111

7.  Wnt pathway antagonists, SFRP1, SFRP2, SOX17, and PPP2R2B, are methylated in gliomas and SFRP1 methylation predicts shorter survival.

Authors:  Aleksandra Majchrzak-Celińska; Marta Słocińska; Anna-Maria Barciszewska; Stanisław Nowak; Wanda Baer-Dubowska
Journal:  J Appl Genet       Date:  2015-09-04       Impact factor: 3.240

8.  An Observational Study on Aberrant Methylation of Runx3 With the Prognosis in Chronic Atrophic Gastritis Patients.

Authors:  Chunna Zhao; Ping Li; Lili Zhang; Bei Wang; Lili Xiao; Feng Guo; Yueguang Wei
Journal:  Medicine (Baltimore)       Date:  2016-05       Impact factor: 1.889

9.  Clinical significance of p16INK4A and p14ARF promoter methylation in renal cell carcinoma: a meta-analysis.

Authors:  Yu Ren; Li Xiao; Guobin Weng; Bingyi Shi
Journal:  Oncotarget       Date:  2017-06-28

10.  DNA methylation analysis with methylation-sensitive high-resolution melting (MS-HRM) reveals gene panel for glioma characteristics.

Authors:  Aleksandra Majchrzak-Celińska; Emilia Dybska; Anna-Maria Barciszewska
Journal:  CNS Neurosci Ther       Date:  2020-08-11       Impact factor: 5.243

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