Literature DB >> 25554787

Protein synthesis. Rqc2p and 60S ribosomal subunits mediate mRNA-independent elongation of nascent chains.

Peter S Shen1, Joseph Park2, Yidan Qin3, Xueming Li4, Krishna Parsawar5, Matthew H Larson6, James Cox7, Yifan Cheng4, Alan M Lambowitz3, Jonathan S Weissman8, Onn Brandman9, Adam Frost10.   

Abstract

In Eukarya, stalled translation induces 40S dissociation and recruitment of the ribosome quality control complex (RQC) to the 60S subunit, which mediates nascent chain degradation. Here we report cryo-electron microscopy structures revealing that the RQC components Rqc2p (YPL009C/Tae2) and Ltn1p (YMR247C/Rkr1) bind to the 60S subunit at sites exposed after 40S dissociation, placing the Ltn1p RING (Really Interesting New Gene) domain near the exit channel and Rqc2p over the P-site transfer RNA (tRNA). We further demonstrate that Rqc2p recruits alanine- and threonine-charged tRNA to the A site and directs the elongation of nascent chains independently of mRNA or 40S subunits. Our work uncovers an unexpected mechanism of protein synthesis, in which a protein--not an mRNA--determines tRNA recruitment and the tagging of nascent chains with carboxy-terminal Ala and Thr extensions ("CAT tails").
Copyright © 2015, American Association for the Advancement of Science.

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Year:  2015        PMID: 25554787      PMCID: PMC4451101          DOI: 10.1126/science.1259724

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  26 in total

1.  Structural basis for mRNA surveillance by archaeal Pelota and GTP-bound EF1α complex.

Authors:  Kan Kobayashi; Izumi Kikuno; Kazushige Kuroha; Kazuki Saito; Koichi Ito; Ryuichiro Ishitani; Toshifumi Inada; Osamu Nureki
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-27       Impact factor: 11.205

2.  Control of translation efficiency in yeast by codon-anticodon interactions.

Authors:  Daniel P Letzring; Kimberly M Dean; Elizabeth J Grayhack
Journal:  RNA       Date:  2010-10-22       Impact factor: 4.942

3.  Single-particle EM reveals extensive conformational variability of the Ltn1 E3 ligase.

Authors:  Dmitry Lyumkis; Selom K Doamekpor; Mario H Bengtson; Joong-Won Lee; Tasha B Toro; Matthew D Petroski; Christopher D Lima; Clinton S Potter; Bridget Carragher; Claudio A P Joazeiro
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-14       Impact factor: 11.205

4.  Arabidopsis tRNA adenosine deaminase arginine edits the wobble nucleotide of chloroplast tRNAArg(ACG) and is essential for efficient chloroplast translation.

Authors:  Etienne Delannoy; Monique Le Ret; Emmanuelle Faivre-Nitschke; Gonzalo M Estavillo; Marc Bergdoll; Nicolas L Taylor; Barry J Pogson; Ian Small; Patrice Imbault; José M Gualberto
Journal:  Plant Cell       Date:  2009-07-14       Impact factor: 11.277

5.  Cdc48-associated complex bound to 60S particles is required for the clearance of aberrant translation products.

Authors:  Quentin Defenouillère; Yanhua Yao; John Mouaikel; Abdelkader Namane; Aurélie Galopier; Laurence Decourty; Antonia Doyen; Christophe Malabat; Cosmin Saveanu; Alain Jacquier; Micheline Fromont-Racine
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-11       Impact factor: 11.205

6.  A mouse forward genetics screen identifies LISTERIN as an E3 ubiquitin ligase involved in neurodegeneration.

Authors:  Jessie Chu; Nancy A Hong; Claudio A Masuda; Brian V Jenkins; Keats A Nelms; Christopher C Goodnow; Richard J Glynne; Hua Wu; Eliezer Masliah; Claudio A P Joazeiro; Steve A Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-05       Impact factor: 11.205

7.  The role of tRNA and ribosome competition in coupling the expression of different mRNAs in Saccharomyces cerevisiae.

Authors:  Dominique Chu; David J Barnes; Tobias von der Haar
Journal:  Nucleic Acids Res       Date:  2011-05-09       Impact factor: 16.971

8.  C to U editing at position 32 of the anticodon loop precedes tRNA 5' leader removal in trypanosomatids.

Authors:  Kirk W Gaston; Mary Anne T Rubio; Jessica L Spears; Irena Pastar; F Nina Papavasiliou; Juan D Alfonzo
Journal:  Nucleic Acids Res       Date:  2007-10-04       Impact factor: 16.971

9.  A ribosome-bound quality control complex triggers degradation of nascent peptides and signals translation stress.

Authors:  Onn Brandman; Jacob Stewart-Ornstein; Daisy Wong; Adam Larson; Christopher C Williams; Gene-Wei Li; Sharleen Zhou; David King; Peter S Shen; Jimena Weibezahn; Joshua G Dunn; Silvi Rouskin; Toshifumi Inada; Adam Frost; Jonathan S Weissman
Journal:  Cell       Date:  2012-11-21       Impact factor: 41.582

10.  Cdc48/p97 promotes degradation of aberrant nascent polypeptides bound to the ribosome.

Authors:  Rati Verma; Robert S Oania; Natalie J Kolawa; Raymond J Deshaies
Journal:  Elife       Date:  2013-01-22       Impact factor: 8.140

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  111 in total

1.  Current outcomes when optimizing 'standard' sample preparation for single-particle cryo-EM.

Authors:  B Carragher; Y Cheng; A Frost; R M Glaeser; G C Lander; E Nogales; H-W Wang
Journal:  J Microsc       Date:  2019-10-07       Impact factor: 1.758

Review 2.  Group II Intron RNPs and Reverse Transcriptases: From Retroelements to Research Tools.

Authors:  Marlene Belfort; Alan M Lambowitz
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-04-01       Impact factor: 10.005

3.  Oxidative opening of the aromatic ring: Tracing the natural history of a large superfamily of dioxygenase domains and their relatives.

Authors:  A Maxwell Burroughs; Margaret E Glasner; Kevin P Barry; Erika A Taylor; L Aravind
Journal:  J Biol Chem       Date:  2019-05-15       Impact factor: 5.157

Review 4.  The stop-and-go traffic regulating protein biogenesis: How translation kinetics controls proteostasis.

Authors:  Kevin C Stein; Judith Frydman
Journal:  J Biol Chem       Date:  2018-11-30       Impact factor: 5.157

5.  Primordial Protein Tails.

Authors:  Onn Brandman; Adam Frost
Journal:  Mol Cell       Date:  2021-01-07       Impact factor: 17.970

Review 6.  Ribosome pausing, arrest and rescue in bacteria and eukaryotes.

Authors:  Allen R Buskirk; Rachel Green
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-03-19       Impact factor: 6.237

7.  MISTERMINATE Mechanistically Links Mitochondrial Dysfunction with Proteostasis Failure.

Authors:  Zhihao Wu; Ishaq Tantray; Junghyun Lim; Songjie Chen; Yu Li; Zoe Davis; Cole Sitron; Jason Dong; Suzana Gispert; Georg Auburger; Onn Brandman; Xiaolin Bi; Michael Snyder; Bingwei Lu
Journal:  Mol Cell       Date:  2019-08-01       Impact factor: 17.970

8.  Quality-control mechanisms targeting translationally stalled and C-terminally extended poly(GR) associated with ALS/FTD.

Authors:  Shuangxi Li; Zhihao Wu; Ishaq Tantray; Yu Li; Songjie Chen; Jason Dong; Steven Glynn; Hannes Vogel; Michael Snyder; Bingwei Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-21       Impact factor: 11.205

Review 9.  Proteome complexity and the forces that drive proteome imbalance.

Authors:  J Wade Harper; Eric J Bennett
Journal:  Nature       Date:  2016-09-15       Impact factor: 49.962

Review 10.  Ribosome-based quality control of mRNA and nascent peptides.

Authors:  Carrie L Simms; Erica N Thomas; Hani S Zaher
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-05-18       Impact factor: 9.957

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