Literature DB >> 25554103

The reduction of gene expression variability from single cells to populations follows simple statistical laws.

Vincent Piras1, Kumar Selvarajoo2.   

Abstract

Recent studies on single cells and population transcriptomics have revealed striking differences in global gene expression distributions. Single cells display highly variable expressions between cells, while cell populations present deterministic global patterns. The mechanisms governing the reduction of transcriptome-wide variability over cell ensemble size, however, remain largely unknown. To investigate transcriptome-wide variability of single cells to different sizes of cell populations, we examined RNA-Seq datasets of 6 mammalian cell types. Our statistical analyses show, for each cell type, increasing cell ensemble size reduces scatter in transcriptome-wide expressions and noise (variance over square mean) values, with corresponding increases in Pearson and Spearman correlations. Next, accounting for technical variability by the removal of lowly expressed transcripts, we demonstrate that transcriptome-wide variability reduces, approximating the law of large numbers. Subsequent analyses reveal that the entire gene expressions of cell populations and only the highly expressed portion of single cells are Gaussian distributed, following the central limit theorem.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Central limit theorem; Gene expression; Law of large numbers; Noise analysis; Single cells; Transcriptomics

Mesh:

Year:  2014        PMID: 25554103     DOI: 10.1016/j.ygeno.2014.12.007

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  13 in total

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Journal:  PLoS Biol       Date:  2016-12-27       Impact factor: 8.029

3.  Diverse Non-genetic, Allele-Specific Expression Effects Shape Genetic Architecture at the Cellular Level in the Mammalian Brain.

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Review 5.  Cellular Deconstruction: Finding Meaning in Individual Cell Variation.

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Journal:  Trends Cell Biol       Date:  2015-10       Impact factor: 20.808

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Authors:  Hannah Dueck; James Eberwine; Junhyong Kim
Journal:  Bioessays       Date:  2015-12-02       Impact factor: 4.345

7.  Transcriptome of neonatal preBötzinger complex neurones in Dbx1 reporter mice.

Authors:  John A Hayes; Andrew Kottick; Maria Cristina D Picardo; Andrew D Halleran; Ronald D Smith; Gregory D Smith; Margaret S Saha; Christopher A Del Negro
Journal:  Sci Rep       Date:  2017-08-17       Impact factor: 4.379

8.  Surprisal analysis of genome-wide transcript profiling identifies differentially expressed genes and pathways associated with four growth conditions in the microalga Chlamydomonas.

Authors:  Kenny A Bogaert; Sheeba S Manoharan-Basil; Emilie Perez; Raphael D Levine; Francoise Remacle; Claire Remacle
Journal:  PLoS One       Date:  2018-04-17       Impact factor: 3.240

9.  Can the second law of thermodynamics hold in cell cultures?

Authors:  Kumar Selvarajoo
Journal:  Front Genet       Date:  2015-08-07       Impact factor: 4.599

10.  Paracrine communication maximizes cellular response fidelity in wound signaling.

Authors:  L Naomi Handly; Anna Pilko; Roy Wollman
Journal:  Elife       Date:  2015-10-08       Impact factor: 8.140

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