Literature DB >> 25553050

Crystal structure of ethyl 4-[(1H-pyrazol-1-yl)meth-yl]benzoate.

Ju-Xian Wang1, Chao Feng2.   

Abstract

In the title mol-ecule, C13H14N2O2, the dihedral angle between the pyrazole and benzene ring mean planes is 76.06 (11)°, and the conformation of the ethyl side chain is anti [C-O-C-C = -175.4 (3)°]. In the crystal, the only directional inter-actions are very weak C-H ⋯π inter-actions involving both the pyrazole and benzene rings, leading to the formation of a three-dimensional network.

Entities:  

Keywords:  crystal structure; ester; pyrazole derivative

Year:  2014        PMID: 25553050      PMCID: PMC4257449          DOI: 10.1107/S1600536814025100

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Dong et al. (2011 ▶). For background to the properties of pyrazole derivatives, see: Adnan & Tarek (2004 ▶); Ashraf et al. (2003 ▶).

Experimental

Crystal data

C13H14N2O2 M = 230.26 Triclinic, a = 8.1338 (12) Å b = 8.1961 (9) Å c = 10.7933 (11) Å α = 74.013 (9)° β = 83.308 (10)° γ = 64.734 (13)° V = 625.54 (13) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.22 × 0.20 × 0.18 mm

Data collection

Agilent SuperNova (Single source at offset, Eos) diffractometer Absorption correction: multi-scan (CrysAlis RED; Agilent, 2012 ▶) T min = 0.982, T max = 0.985 4295 measured reflections 2197 independent reflections 1639 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.067 wR(F 2) = 0.201 S = 1.15 2197 reflections 155 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.23 e Å−3

Data collection: FRAMBO (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814025100/hb7319sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814025100/hb7319Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814025100/hb7319Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814025100/hb7319fig1.tif The mol­ecular structure of the title compound with displacement ellipsoids drawn at the 30% probability level. Click here for additional data file. b . DOI: 10.1107/S1600536814025100/hb7319fig2.tif View of the packing diagram of the title compound along the b axis. CCDC reference: 1034364 Additional supporting information: crystallographic information; 3D view; checkCIF report
C13H14N2O2Z = 2
Mr = 230.26F(000) = 244
Triclinic, P1Dx = 1.222 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1338 (12) ÅCell parameters from 1485 reflections
b = 8.1961 (9) Åθ = 4.3–28.2°
c = 10.7933 (11) ŵ = 0.08 mm1
α = 74.013 (9)°T = 293 K
β = 83.308 (10)°Block, colourless
γ = 64.734 (13)°0.22 × 0.20 × 0.18 mm
V = 625.54 (13) Å3
Agilent SuperNova (Single source at offset, Eos) diffractometer2197 independent reflections
Radiation source: fine-focus sealed tube1639 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
phi and ω scansθmax = 25.0°, θmin = 3.0°
Absorption correction: multi-scan (CrysAlis RED; Agilent, 2012)h = −9→9
Tmin = 0.982, Tmax = 0.985k = −9→9
4295 measured reflectionsl = −12→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.067Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.201H-atom parameters constrained
S = 1.15w = 1/[σ2(Fo2) + (0.079P)2 + 0.2197P] where P = (Fo2 + 2Fc2)/3
2197 reflections(Δ/σ)max < 0.001
155 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.3321 (5)0.2354 (4)0.0922 (3)0.0772 (9)
H1−0.44120.32190.05160.093*
C2−0.3185 (4)0.0903 (5)0.1964 (3)0.0787 (9)
H2−0.41190.06060.23940.094*
C3−0.1386 (4)−0.0001 (4)0.2228 (3)0.0718 (9)
H3−0.0841−0.10680.28850.086*
C40.1384 (4)0.0519 (4)0.1369 (3)0.0653 (8)
H4A0.17660.08610.04860.078*
H4B0.2091−0.08050.17120.078*
C50.1753 (3)0.1603 (4)0.2163 (2)0.0543 (7)
C60.2157 (4)0.0834 (4)0.3464 (3)0.0610 (7)
H60.2269−0.03740.38420.073*
C70.2396 (4)0.1856 (4)0.4205 (2)0.0584 (7)
H70.26710.13260.50770.070*
C80.2227 (3)0.3657 (3)0.3656 (2)0.0505 (6)
C90.1870 (4)0.4413 (4)0.2343 (3)0.0573 (7)
H90.17840.56110.19590.069*
C100.1643 (4)0.3379 (4)0.1609 (3)0.0588 (7)
H100.14130.38880.07310.071*
C110.2393 (4)0.4838 (4)0.4420 (3)0.0561 (7)
C120.2906 (4)0.5017 (5)0.6500 (3)0.0726 (9)
H12A0.17470.60500.65520.087*
H12B0.38050.55120.61640.087*
C130.3460 (6)0.3720 (6)0.7790 (4)0.1028 (13)
H13A0.25740.32190.81030.154*
H13B0.35440.43780.83740.154*
H13C0.46220.27220.77290.154*
N1−0.0526 (3)0.0895 (3)0.13866 (19)0.0554 (6)
N2−0.1716 (4)0.2383 (3)0.0558 (2)0.0741 (8)
O10.2758 (3)0.3958 (3)0.56635 (18)0.0672 (6)
O20.2213 (3)0.6418 (3)0.3986 (2)0.0823 (7)
U11U22U33U12U13U23
C10.075 (2)0.072 (2)0.083 (2)−0.0205 (17)−0.0233 (17)−0.0225 (17)
C20.070 (2)0.088 (2)0.079 (2)−0.0365 (18)0.0043 (16)−0.0178 (18)
C30.078 (2)0.075 (2)0.0547 (17)−0.0352 (17)−0.0020 (14)0.0029 (15)
C40.0684 (18)0.083 (2)0.0557 (17)−0.0358 (16)0.0119 (13)−0.0318 (15)
C50.0541 (15)0.0664 (17)0.0469 (15)−0.0276 (13)0.0101 (11)−0.0209 (12)
C60.0804 (19)0.0549 (16)0.0506 (16)−0.0330 (14)0.0032 (13)−0.0109 (12)
C70.0788 (19)0.0601 (16)0.0391 (14)−0.0336 (14)0.0003 (12)−0.0086 (12)
C80.0534 (14)0.0530 (14)0.0456 (14)−0.0235 (12)0.0016 (11)−0.0114 (11)
C90.0660 (17)0.0557 (15)0.0489 (15)−0.0289 (13)−0.0030 (12)−0.0035 (12)
C100.0630 (17)0.0721 (18)0.0404 (14)−0.0305 (14)0.0011 (11)−0.0090 (13)
C110.0593 (16)0.0558 (16)0.0552 (16)−0.0262 (13)−0.0016 (12)−0.0124 (13)
C120.079 (2)0.082 (2)0.072 (2)−0.0358 (17)−0.0023 (15)−0.0388 (17)
C130.131 (3)0.105 (3)0.070 (2)−0.031 (2)−0.027 (2)−0.039 (2)
N10.0692 (14)0.0607 (13)0.0401 (12)−0.0296 (11)−0.0015 (10)−0.0136 (10)
N20.100 (2)0.0673 (16)0.0533 (14)−0.0374 (14)−0.0200 (13)−0.0007 (12)
O10.0917 (15)0.0665 (12)0.0502 (12)−0.0353 (11)−0.0060 (10)−0.0181 (9)
O20.1173 (19)0.0621 (13)0.0756 (15)−0.0452 (13)−0.0147 (13)−0.0102 (11)
C1—N21.327 (4)C7—H70.9300
C1—C21.367 (5)C8—C91.391 (3)
C1—H10.9300C8—C111.487 (4)
C2—C31.351 (4)C9—C101.385 (4)
C2—H20.9300C9—H90.9300
C3—N11.333 (4)C10—H100.9300
C3—H30.9300C11—O21.200 (3)
C4—N11.448 (3)C11—O11.336 (3)
C4—C51.524 (4)C12—O11.460 (3)
C4—H4A0.9700C12—C131.481 (5)
C4—H4B0.9700C12—H12A0.9700
C5—C101.381 (4)C12—H12B0.9700
C5—C61.385 (4)C13—H13A0.9600
C6—C71.386 (4)C13—H13B0.9600
C6—H60.9300C13—H13C0.9600
C7—C81.384 (4)N1—N21.348 (3)
N2—C1—C2112.2 (3)C10—C9—C8119.9 (2)
N2—C1—H1123.9C10—C9—H9120.1
C2—C1—H1123.9C8—C9—H9120.1
C3—C2—C1104.4 (3)C5—C10—C9120.9 (2)
C3—C2—H2127.8C5—C10—H10119.5
C1—C2—H2127.8C9—C10—H10119.5
N1—C3—C2108.4 (3)O2—C11—O1122.7 (3)
N1—C3—H3125.8O2—C11—C8124.4 (3)
C2—C3—H3125.8O1—C11—C8112.9 (2)
N1—C4—C5111.3 (2)O1—C12—C13107.1 (3)
N1—C4—H4A109.4O1—C12—H12A110.3
C5—C4—H4A109.4C13—C12—H12A110.3
N1—C4—H4B109.4O1—C12—H12B110.3
C5—C4—H4B109.4C13—C12—H12B110.3
H4A—C4—H4B108.0H12A—C12—H12B108.5
C10—C5—C6119.0 (2)C12—C13—H13A109.5
C10—C5—C4120.7 (2)C12—C13—H13B109.5
C6—C5—C4120.3 (2)H13A—C13—H13B109.5
C5—C6—C7120.4 (2)C12—C13—H13C109.5
C5—C6—H6119.8H13A—C13—H13C109.5
C7—C6—H6119.8H13B—C13—H13C109.5
C8—C7—C6120.4 (2)C3—N1—N2110.7 (3)
C8—C7—H7119.8C3—N1—C4127.7 (2)
C6—C7—H7119.8N2—N1—C4121.4 (2)
C7—C8—C9119.2 (2)C1—N2—N1104.3 (2)
C7—C8—C11122.5 (2)C11—O1—C12117.0 (2)
C9—C8—C11118.3 (2)
N2—C1—C2—C3−0.8 (4)C7—C8—C11—O2−178.2 (3)
C1—C2—C3—N10.6 (4)C9—C8—C11—O21.1 (4)
N1—C4—C5—C10−88.7 (3)C7—C8—C11—O11.5 (4)
N1—C4—C5—C689.5 (3)C9—C8—C11—O1−179.2 (2)
C10—C5—C6—C71.8 (4)C2—C3—N1—N2−0.3 (4)
C4—C5—C6—C7−176.5 (2)C2—C3—N1—C4174.4 (3)
C5—C6—C7—C80.2 (4)C5—C4—N1—C3−89.3 (4)
C6—C7—C8—C9−2.0 (4)C5—C4—N1—N284.9 (3)
C6—C7—C8—C11177.3 (2)C2—C1—N2—N10.6 (4)
C7—C8—C9—C101.6 (4)C3—N1—N2—C1−0.2 (3)
C11—C8—C9—C10−177.7 (2)C4—N1—N2—C1−175.3 (2)
C6—C5—C10—C9−2.1 (4)O2—C11—O1—C121.0 (4)
C4—C5—C10—C9176.1 (2)C8—C11—O1—C12−178.7 (2)
C8—C9—C10—C50.4 (4)C13—C12—O1—C11−175.4 (3)
D—H···AD—HH···AD···AD—H···A
C2—H2···Cg2i0.932.943.670 (4)137
C4—H4A···Cg1ii0.973.003.600 (3)122
C12—H12A···Cg2iii0.972.823.689 (4)150
Table 1

Hydrogen-bond geometry (, )

Cg1 and Cg2 are the centroids of the N1/N2/C1C3 and C5C10 rings, respectively.

DHA DHHA D A DHA
C2H2Cg2i 0.932.943.670(4)137
C4H4A Cg1ii 0.973.003.600(3)122
C12H12A Cg2iii 0.972.823.689(4)150

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
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3.  Design, synthesis and biological evaluation of some pyrazole derivatives as anti-inflammatory-antimicrobial agents.

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4.  1,4-Bis[(1H-pyrazol-1-yl)meth-yl]benzene.

Authors:  Gui-Ying Dong; Tong-Fei Liu; Cui-Huan Jiao; Xiao-Chen Deng; Xiao-Ge Shi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-18
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