Literature DB >> 25553040

Crystal structure of 2-[(di-chloro-methane)sulfon-yl]pyridine.

Zhiqiu Chen1, Hembat Bolat1, Xing Wan1, Ya Li1.   

Abstract

The asymmetric unit of the title compound, C6H5Cl2NO2S, contains two mol-ecules with similar conformations (r.m.s. overlay fit for the non-H atoms = 0.067 Å). Atoms attached to the pendent Csp (3)-S bond are arranged in a staggered conformation with one of the Cl atoms anti to the C atom in the aromatic ring [C-S-C-Cl torsion angles = 178.41 (11) and -176.70 (13)°]. In the crystal, mol-ecules are linked by C-H⋯N and C-H⋯O hydrogen bonds, generating a three-dimensional network, and weak aromatic π-π stacking is also observed [centroid-centroid separation = 3.8902 (17) Å].

Entities:  

Keywords:  crystal structure; hydrogen bonding; pyridine derivative; sulfone; π–π stacking

Year:  2014        PMID: 25553040      PMCID: PMC4257385          DOI: 10.1107/S1600536814025148

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of sulfone derivatives, see: Chen et al. (2012 ▶); Drews (2000 ▶); Raja et al. (2009 ▶). For the uses of halomethyl sulfone derivatives in organic synthesis, see: Li & Hu (2005 ▶); Prakash et al. (2013 ▶); Zhao et al. (2010 ▶). For the synthesis of the starting material, see: Kamiyama et al. (1988 ▶).

Experimental

Crystal data

C6H5Cl2NO2S M = 226.07 Monoclinic, a = 9.9647 (10) Å b = 12.2131 (11) Å c = 15.7158 (15) Å β = 108.483 (1)° V = 1814.0 (3) Å3 Z = 8 Mo Kα radiation μ = 0.90 mm−1 T = 293 K 0.21 × 0.16 × 0.12 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.615, T max = 0.746 10817 measured reflections 3570 independent reflections 2907 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.102 S = 1.03 3570 reflections 218 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.37 e Å−3

Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814025148/hb7316sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814025148/hb7316Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814025148/hb7316Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814025148/hb7316fig1.tif Mol­ecular structure of the title compound. The displacement ellipsoids are drawn at the 50% probability level. CCDC reference: 1034519 Additional supporting information: crystallographic information; 3D view; checkCIF report
C6H5Cl2NO2SF(000) = 912
Mr = 226.07Dx = 1.656 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 9.9647 (10) ÅCell parameters from 4116 reflections
b = 12.2131 (11) Åθ = 4.3–54.4°
c = 15.7158 (15) ŵ = 0.90 mm1
β = 108.483 (1)°T = 293 K
V = 1814.0 (3) Å3Prism, colorless
Z = 80.21 × 0.16 × 0.12 mm
Bruker SMART CCD diffractometer2907 reflections with I > 2σ(I)
phi and ω scansRint = 0.034
Absorption correction: multi-scan (SADABS; Bruker, 2007)θmax = 26.0°, θmin = 2.2°
Tmin = 0.615, Tmax = 0.746h = −12→12
10817 measured reflectionsk = −15→13
3570 independent reflectionsl = −19→14
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.037w = 1/[σ2(Fo2) + (0.048P)2 + 0.7592P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.102(Δ/σ)max = 0.001
S = 1.03Δρmax = 0.37 e Å3
3570 reflectionsΔρmin = −0.37 e Å3
218 parametersExtinction correction: SHELXL2013 (Sheldrick, 2013), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0286 (15)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S10.22031 (6)0.33604 (5)0.12351 (4)0.04809 (18)
S20.34445 (7)0.72345 (5)0.63426 (4)0.05073 (19)
Cl10.13628 (8)0.50108 (5)0.23115 (5)0.0676 (2)
Cl20.16196 (8)0.27131 (5)0.28379 (5)0.0647 (2)
Cl30.19229 (9)0.60561 (8)0.73732 (6)0.0850 (3)
Cl40.32582 (10)0.81316 (7)0.79958 (5)0.0874 (3)
N10.4188 (2)0.47686 (16)0.13024 (13)0.0499 (5)
N20.4604 (2)0.53408 (16)0.62759 (13)0.0517 (5)
O10.0757 (2)0.32158 (16)0.07175 (13)0.0733 (6)
O20.3169 (2)0.24747 (14)0.13497 (12)0.0672 (5)
O30.2167 (2)0.77708 (15)0.58491 (13)0.0734 (6)
O40.4775 (2)0.77492 (15)0.64783 (14)0.0699 (5)
C10.2303 (2)0.37906 (17)0.23599 (15)0.0447 (5)
H10.32960.39100.27130.054*
C20.2870 (2)0.45238 (18)0.08275 (14)0.0429 (5)
C30.2047 (3)0.5082 (2)0.00872 (16)0.0529 (6)
H30.11260.4864−0.02200.064*
C40.2646 (3)0.5977 (2)−0.01787 (17)0.0592 (6)
H40.21350.6385−0.06750.071*
C50.4002 (3)0.6258 (2)0.02950 (19)0.0607 (7)
H50.44250.68610.01230.073*
C60.4741 (3)0.5646 (2)0.10274 (18)0.0578 (6)
H60.56630.58510.13450.069*
C70.3368 (3)0.6905 (2)0.74546 (16)0.0523 (6)
H70.42390.65240.77920.063*
C80.3445 (2)0.59091 (18)0.58779 (15)0.0454 (5)
C90.2333 (3)0.5566 (2)0.51689 (17)0.0596 (6)
H90.15500.60100.49160.072*
C100.2428 (3)0.4520 (2)0.48428 (19)0.0691 (8)
H100.16950.42380.43670.083*
C110.3620 (3)0.3912 (2)0.52340 (19)0.0648 (7)
H110.37180.32170.50190.078*
C120.4667 (3)0.4344 (2)0.59470 (19)0.0612 (7)
H120.54630.39180.62150.073*
U11U22U33U12U13U23
S10.0590 (4)0.0370 (3)0.0447 (3)−0.0097 (2)0.0115 (3)−0.0018 (2)
S20.0659 (4)0.0382 (3)0.0499 (3)0.0138 (3)0.0209 (3)0.0044 (2)
Cl10.0791 (5)0.0434 (3)0.0909 (5)0.0082 (3)0.0420 (4)0.0000 (3)
Cl20.0849 (5)0.0483 (4)0.0719 (4)−0.0087 (3)0.0407 (4)0.0051 (3)
Cl30.0800 (5)0.1064 (7)0.0806 (5)−0.0173 (5)0.0426 (4)−0.0035 (5)
Cl40.1221 (7)0.0714 (5)0.0727 (5)0.0256 (5)0.0367 (5)−0.0173 (4)
N10.0482 (11)0.0488 (11)0.0503 (11)−0.0034 (9)0.0123 (9)0.0050 (9)
N20.0576 (12)0.0422 (10)0.0543 (11)0.0135 (9)0.0164 (9)0.0040 (9)
O10.0736 (13)0.0696 (12)0.0613 (11)−0.0329 (10)−0.0005 (10)0.0030 (9)
O20.1029 (15)0.0415 (9)0.0640 (11)0.0094 (9)0.0362 (11)0.0002 (8)
O30.0935 (14)0.0607 (11)0.0617 (11)0.0395 (10)0.0183 (10)0.0112 (9)
O40.0863 (14)0.0513 (10)0.0810 (13)−0.0130 (9)0.0390 (11)−0.0032 (9)
C10.0474 (12)0.0372 (11)0.0512 (13)−0.0037 (9)0.0182 (10)−0.0011 (9)
C20.0505 (13)0.0383 (11)0.0400 (11)−0.0032 (9)0.0145 (10)−0.0009 (9)
C30.0541 (14)0.0567 (14)0.0444 (12)0.0023 (11)0.0104 (11)0.0039 (11)
C40.0749 (18)0.0531 (14)0.0522 (14)0.0128 (13)0.0240 (13)0.0148 (11)
C50.0749 (18)0.0466 (13)0.0696 (17)−0.0037 (12)0.0357 (15)0.0081 (12)
C60.0539 (14)0.0545 (14)0.0655 (16)−0.0086 (12)0.0198 (12)0.0043 (12)
C70.0574 (14)0.0522 (13)0.0493 (13)0.0141 (11)0.0195 (11)0.0013 (11)
C80.0556 (13)0.0390 (11)0.0437 (12)0.0071 (10)0.0187 (10)0.0023 (9)
C90.0640 (16)0.0594 (15)0.0512 (14)0.0108 (12)0.0124 (12)0.0016 (12)
C100.083 (2)0.0644 (17)0.0554 (15)−0.0077 (15)0.0154 (14)−0.0098 (13)
C110.093 (2)0.0406 (13)0.0681 (17)0.0037 (13)0.0359 (16)−0.0039 (12)
C120.0751 (18)0.0419 (13)0.0687 (17)0.0158 (12)0.0259 (14)0.0032 (12)
S1—O21.4212 (19)C2—C31.373 (3)
S1—O11.4235 (19)C3—C41.372 (4)
S1—C21.772 (2)C3—H30.9300
S1—C11.816 (2)C4—C51.364 (4)
S2—O41.421 (2)C4—H40.9300
S2—O31.4231 (19)C5—C61.374 (4)
S2—C81.776 (2)C5—H50.9300
S2—C71.818 (2)C6—H60.9300
Cl1—C11.749 (2)C7—H70.9800
Cl2—C11.756 (2)C8—C91.364 (3)
Cl3—C71.746 (3)C9—C101.390 (4)
Cl4—C71.743 (2)C9—H90.9300
N1—C21.323 (3)C10—C111.370 (4)
N1—C61.338 (3)C10—H100.9300
N2—C81.323 (3)C11—C121.371 (4)
N2—C121.332 (3)C11—H110.9300
C1—H10.9800C12—H120.9300
O2—S1—O1120.03 (13)C3—C4—H4120.5
O2—S1—C2109.84 (11)C4—C5—C6119.7 (2)
O1—S1—C2108.69 (11)C4—C5—H5120.2
O2—S1—C1105.72 (10)C6—C5—H5120.2
O1—S1—C1108.98 (12)N1—C6—C5122.7 (2)
C2—S1—C1102.05 (10)N1—C6—H6118.6
O4—S2—O3120.59 (13)C5—C6—H6118.6
O4—S2—C8110.07 (11)Cl4—C7—Cl3111.61 (13)
O3—S2—C8108.19 (12)Cl4—C7—S2107.87 (13)
O4—S2—C7105.97 (12)Cl3—C7—S2110.24 (13)
O3—S2—C7108.84 (12)Cl4—C7—H7109.0
C8—S2—C7101.49 (11)Cl3—C7—H7109.0
C2—N1—C6115.8 (2)S2—C7—H7109.0
C8—N2—C12116.0 (2)N2—C8—C9125.9 (2)
Cl1—C1—Cl2112.46 (13)N2—C8—S2113.44 (17)
Cl1—C1—S1109.92 (12)C9—C8—S2120.67 (18)
Cl2—C1—S1106.89 (11)C8—C9—C10116.8 (2)
Cl1—C1—H1109.2C8—C9—H9121.6
Cl2—C1—H1109.2C10—C9—H9121.6
S1—C1—H1109.2C11—C10—C9118.9 (3)
N1—C2—C3125.8 (2)C11—C10—H10120.6
N1—C2—S1113.34 (16)C9—C10—H10120.6
C3—C2—S1120.84 (18)C10—C11—C12119.0 (2)
C4—C3—C2116.9 (2)C10—C11—H11120.5
C4—C3—H3121.5C12—C11—H11120.5
C2—C3—H3121.5N2—C12—C11123.4 (2)
C5—C4—C3119.1 (2)N2—C12—H12118.3
C5—C4—H4120.5C11—C12—H12118.3
O2—S1—C1—Cl1170.96 (12)O4—S2—C7—Cl468.31 (15)
O1—S1—C1—Cl1−58.75 (15)O3—S2—C7—Cl4−62.76 (16)
C2—S1—C1—Cl156.09 (14)C8—S2—C7—Cl4−176.70 (13)
O2—S1—C1—Cl2−66.71 (14)O4—S2—C7—Cl3−169.59 (13)
O1—S1—C1—Cl263.58 (14)O3—S2—C7—Cl359.34 (16)
C2—S1—C1—Cl2178.41 (11)C8—S2—C7—Cl3−54.61 (15)
C6—N1—C2—C30.5 (4)C12—N2—C8—C9−0.3 (4)
C6—N1—C2—S1−179.51 (18)C12—N2—C8—S2−179.28 (19)
O2—S1—C2—N1−50.8 (2)O4—S2—C8—N245.1 (2)
O1—S1—C2—N1176.04 (17)O3—S2—C8—N2178.72 (18)
C1—S1—C2—N161.00 (19)C7—S2—C8—N2−66.86 (19)
O2—S1—C2—C3129.1 (2)O4—S2—C8—C9−134.0 (2)
O1—S1—C2—C3−4.0 (2)O3—S2—C8—C9−0.3 (2)
C1—S1—C2—C3−119.0 (2)C7—S2—C8—C9114.1 (2)
N1—C2—C3—C4−0.4 (4)N2—C8—C9—C100.6 (4)
S1—C2—C3—C4179.66 (18)S2—C8—C9—C10179.4 (2)
C2—C3—C4—C50.2 (4)C8—C9—C10—C11−1.1 (4)
C3—C4—C5—C6−0.1 (4)C9—C10—C11—C121.5 (4)
C2—N1—C6—C5−0.5 (4)C8—N2—C12—C110.7 (4)
C4—C5—C6—N10.3 (4)C10—C11—C12—N2−1.3 (4)
D—H···AD—HH···AD···AD—H···A
C1—H1···N2i0.982.373.321 (3)163
C5—H5···O3ii0.932.643.220 (3)121
C6—H6···O3ii0.932.543.177 (3)126
C7—H7···N1i0.982.363.303 (3)162
C11—H11···O1iii0.932.643.292 (3)128
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C1H1N2i 0.982.373.321(3)163
C5H5O3ii 0.932.643.220(3)121
C6H6O3ii 0.932.543.177(3)126
C7H7N1i 0.982.363.303(3)162
C11H11O1iii 0.932.643.292(3)128

Symmetry codes: (i) ; (ii) ; (iii) .

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