Literature DB >> 25553026

Crystal structure of (E)-N'-(4-chloro-benzyl-idene)-4-methyl-benzene-sulfono-hydrazide: a hexa-gonal polymorph.

J Balaji1, J John Francis Xavier2, S Prabu1, P Srinivasan1.   

Abstract

The title compound, C14H13ClN2O2S, crystallized in the enanti-omorphic defining hexa-gonal space group P61 [Flack parameter = -0.02 (7)]. The partially hydrated form of the same compound, crystallizing in the triclinic space group n class="Gene">P-1, has been reported previously [Kia et al. (2009b). Acta Cryst. E65, o1119], as has the crystal structure of the bromo derivative, also crystallizing in the space group P-1 [Kia et al. (2009a). Acta Cryst. E65, o821]. The title mol-ecule is non-planar with the planes of the benzene rings being inclined to one another by 76.62 (13)°, and has an E conformation about the C=N bond. In the crystal, mol-ecules are linked via N-H⋯O hydrogen bonds forming 61 helical chains running along [001]. The chains are linked via C-H⋯O hydrogen bonds, C-H⋯π inter-actions and short Cl⋯O [3.015 (3) Å] inter-actions, forming a three-dimensional structure.

Entities:  

Keywords:  Schiff base; crystal structure; helical chains; hydrazones; hydrogen bonding.; sulfono­hydrazide

Year:  2014        PMID: 25553026      PMCID: PMC4257446          DOI: 10.1107/S1600536814023721

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activities of hydrazones, see: Ajani et al. (2010 ▶). For the crystal structure of the triclinic polymorph, which crystallized with two independent mol­ecules in the asymmetric unit, one of which was n class="Disease">disordered, and with 0.15 of a water mol­ecule, see: Kia et al. (2009b ▶). For the crystal structure of the bromo derivative, also crystallizing in space group P , see: Kia et al. (2009a ▶).

Experimental

Crystal data

C14H13ClN2O2S M = 308.77 Hexagonal, a = 10.8907 (3) Å c = 21.4542 (7) Å V = 2203.71 (11) Å3 Z = 6 Mo Kα radiation μ = 0.40 mm−1 T = 293 K 0.35 × 0.30 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.871, T max = 0.910 22095 measured reflections 2586 independent reflections 2345 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.072 S = 1.04 2586 reflections 186 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.12 e Å−3 Δρmin = −0.16 e Å−3 Absolute structure: Flack (1983 ▶), 1257 Friedel pairs Absolute structure parameter: −0.02 (7)

Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: n class="Gene">APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814023721/su2800sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814023721/su2800Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814023721/su2800Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814023721/su2800fig1.tif The mol­ecular structure of the title compound, with atom labelling. The displacement ellipsoids are drawn at the 30% probability level. Click here for additional data file. c . DOI: 10.1107/S1600536814023721/su2800fig2.tif A view along the c axis of the crystal packing of the title compound. The N—H⋯O and C—H⋯O hydrogen bonds are indicated by dashed lines (see Table 1 for details; n class="Disease">H atoms not involved in these inter­actions have been omitted for clarity). CCDC reference: 1031289 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H13ClN2O2SDx = 1.396 Mg m3
Mr = 308.77Mo Kα radiation, λ = 0.71073 Å
Hexagonal, P61Cell parameters from 9375 reflections
Hall symbol: P 61θ = 2.4–25.8°
a = 10.8907 (3) ŵ = 0.40 mm1
c = 21.4542 (7) ÅT = 293 K
V = 2203.71 (11) Å3Block, yellow
Z = 60.35 × 0.30 × 0.25 mm
F(000) = 960
Bruker Kappa APEXII CCD diffractometer2586 independent reflections
Radiation source: fine-focus sealed tube2345 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
ω and φ scanθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.871, Tmax = 0.910k = −12→12
22095 measured reflectionsl = −25→25
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.029w = 1/[σ2(Fo2) + (0.0306P)2 + 0.7106P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.072(Δ/σ)max = 0.001
S = 1.04Δρmax = 0.12 e Å3
2586 reflectionsΔρmin = −0.16 e Å3
186 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
2 restraintsExtinction coefficient: 0.0026 (4)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1257 Friedel pairs
Secondary atom site location: difference Fourier mapAbsolute structure parameter: −0.02 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.1026 (3)−0.5080 (4)0.94696 (15)0.0727 (9)
H1A−0.2001−0.53640.93920.109*
H1B−0.0699−0.44820.98310.109*
H1C−0.0942−0.59060.95390.109*
C2−0.0151 (3)−0.4286 (3)0.89196 (13)0.0480 (6)
C3−0.0778 (3)−0.4059 (3)0.84061 (13)0.0507 (6)
H3−0.1751−0.44100.84050.061*
C40.0019 (3)−0.3321 (3)0.78968 (12)0.0496 (6)
H4−0.0415−0.31800.75530.060*
C50.1458 (2)−0.2795 (2)0.79003 (11)0.0419 (5)
C60.2103 (3)−0.3013 (3)0.84070 (12)0.0483 (6)
H60.3077−0.26570.84080.058*
C70.1296 (3)−0.3758 (3)0.89098 (13)0.0514 (6)
H70.1730−0.39110.92500.062*
C80.1633 (3)0.1027 (3)0.74279 (11)0.0426 (5)
H80.25430.17970.74740.051*
C90.0430 (3)0.1244 (3)0.74794 (10)0.0415 (5)
C10−0.0947 (3)0.0146 (3)0.74508 (13)0.0520 (6)
H10−0.1127−0.07660.73670.062*
C11−0.2070 (3)0.0381 (3)0.75456 (13)0.0579 (7)
H11−0.3000−0.03660.75260.069*
C12−0.1789 (3)0.1731 (3)0.76682 (12)0.0522 (6)
C13−0.0439 (3)0.2844 (3)0.76863 (13)0.0574 (7)
H13−0.02660.37580.77630.069*
C140.0664 (3)0.2595 (3)0.75898 (12)0.0516 (6)
H140.15890.33530.75990.062*
O10.3852 (2)−0.1677 (2)0.73010 (9)0.0597 (5)
O20.1652 (2)−0.2455 (2)0.67125 (8)0.0605 (5)
S10.24764 (7)−0.18427 (7)0.72562 (3)0.04549 (16)
Cl1−0.31836 (9)0.20068 (10)0.78326 (4)0.0779 (3)
N10.2735 (2)−0.0230 (2)0.73014 (10)0.0445 (5)
N20.1474 (2)−0.0187 (2)0.73212 (9)0.0424 (5)
H10.337 (2)0.033 (2)0.7573 (10)0.050 (8)*
U11U22U33U12U13U23
C10.0601 (19)0.084 (2)0.0681 (19)0.0315 (17)0.0065 (15)0.0170 (17)
C20.0489 (14)0.0454 (14)0.0498 (13)0.0237 (12)−0.0031 (13)−0.0033 (12)
C30.0402 (14)0.0510 (15)0.0621 (16)0.0238 (12)−0.0056 (12)−0.0032 (13)
C40.0518 (15)0.0533 (15)0.0512 (14)0.0319 (13)−0.0149 (12)−0.0028 (13)
C50.0472 (14)0.0423 (13)0.0434 (13)0.0278 (12)−0.0050 (11)−0.0061 (11)
C60.0403 (14)0.0609 (16)0.0473 (14)0.0280 (13)−0.0056 (11)−0.0017 (12)
C70.0511 (15)0.0625 (16)0.0432 (12)0.0304 (13)−0.0069 (12)0.0017 (13)
C80.0491 (15)0.0436 (14)0.0383 (12)0.0255 (12)−0.0016 (10)−0.0019 (10)
C90.0537 (15)0.0440 (13)0.0353 (11)0.0309 (12)−0.0025 (10)0.0000 (10)
C100.0600 (17)0.0442 (15)0.0621 (16)0.0338 (14)−0.0055 (13)−0.0075 (12)
C110.0540 (16)0.0562 (17)0.0695 (18)0.0321 (14)−0.0018 (13)−0.0022 (14)
C120.0623 (17)0.0643 (18)0.0480 (14)0.0452 (15)−0.0021 (12)−0.0023 (13)
C130.0733 (19)0.0496 (16)0.0658 (17)0.0430 (16)−0.0017 (14)−0.0071 (13)
C140.0529 (16)0.0444 (15)0.0627 (17)0.0282 (13)−0.0049 (12)−0.0057 (12)
O10.0637 (12)0.0735 (13)0.0631 (11)0.0502 (11)0.0132 (9)0.0121 (10)
O20.0933 (15)0.0647 (12)0.0418 (9)0.0533 (12)−0.0108 (10)−0.0124 (9)
S10.0604 (4)0.0513 (4)0.0401 (3)0.0394 (3)0.0020 (3)−0.0015 (3)
Cl10.0746 (5)0.0945 (6)0.0928 (6)0.0635 (5)−0.0005 (5)−0.0118 (5)
N10.0498 (13)0.0489 (12)0.0446 (11)0.0320 (11)−0.0005 (10)−0.0030 (10)
N20.0511 (12)0.0469 (12)0.0400 (11)0.0327 (10)−0.0022 (9)−0.0032 (9)
C1—C21.491 (4)C8—H80.9300
C1—H1A0.9600C9—C101.374 (3)
C1—H1B0.9600C9—C141.383 (3)
C1—H1C0.9600C10—C111.384 (4)
C2—C71.381 (3)C10—H100.9300
C2—C31.382 (4)C11—C121.369 (4)
C3—C41.376 (4)C11—H110.9300
C3—H30.9300C12—C131.360 (4)
C4—C51.374 (3)C12—Cl11.726 (3)
C4—H40.9300C13—C141.373 (4)
C5—C61.378 (3)C13—H130.9300
C5—S11.751 (3)C14—H140.9300
C6—C71.372 (4)O1—S11.4197 (18)
C6—H60.9300O2—S11.4189 (19)
C7—H70.9300S1—N11.637 (2)
C8—N21.265 (3)N1—N21.399 (3)
C8—C91.447 (3)N1—H10.875 (17)
C2—C1—H1A109.5C10—C9—C8122.5 (2)
C2—C1—H1B109.5C14—C9—C8119.1 (2)
H1A—C1—H1B109.5C9—C10—C11120.9 (2)
C2—C1—H1C109.5C9—C10—H10119.6
H1A—C1—H1C109.5C11—C10—H10119.6
H1B—C1—H1C109.5C12—C11—C10118.8 (3)
C7—C2—C3118.4 (2)C12—C11—H11120.6
C7—C2—C1121.2 (3)C10—C11—H11120.6
C3—C2—C1120.3 (2)C13—C12—C11121.6 (2)
C4—C3—C2120.9 (2)C13—C12—Cl1119.5 (2)
C4—C3—H3119.5C11—C12—Cl1118.8 (2)
C2—C3—H3119.5C12—C13—C14118.8 (2)
C5—C4—C3119.6 (2)C12—C13—H13120.6
C5—C4—H4120.2C14—C13—H13120.6
C3—C4—H4120.2C13—C14—C9121.5 (3)
C4—C5—C6120.4 (2)C13—C14—H14119.3
C4—C5—S1119.71 (18)C9—C14—H14119.3
C6—C5—S1119.89 (19)O2—S1—O1119.65 (12)
C7—C6—C5119.4 (2)O2—S1—N1106.40 (11)
C7—C6—H6120.3O1—S1—N1104.78 (11)
C5—C6—H6120.3O2—S1—C5107.80 (12)
C6—C7—C2121.2 (2)O1—S1—C5109.72 (11)
C6—C7—H7119.4N1—S1—C5107.91 (11)
C2—C7—H7119.4N2—N1—S1113.13 (16)
N2—C8—C9121.5 (2)N2—N1—H1113.4 (17)
N2—C8—H8119.3S1—N1—H1116.2 (17)
C9—C8—H8119.3C8—N2—N1114.7 (2)
C10—C9—C14118.3 (2)
C7—C2—C3—C4−0.2 (4)C11—C12—C13—C14−1.2 (4)
C1—C2—C3—C4179.7 (3)Cl1—C12—C13—C14176.3 (2)
C2—C3—C4—C5−0.4 (4)C12—C13—C14—C9−0.4 (4)
C3—C4—C5—C60.6 (4)C10—C9—C14—C131.8 (4)
C3—C4—C5—S1−179.42 (19)C8—C9—C14—C13−175.3 (2)
C4—C5—C6—C7−0.1 (4)C4—C5—S1—O2−35.4 (2)
S1—C5—C6—C7179.9 (2)C6—C5—S1—O2144.6 (2)
C5—C6—C7—C2−0.5 (4)C4—C5—S1—O1−167.3 (2)
C3—C2—C7—C60.7 (4)C6—C5—S1—O112.8 (2)
C1—C2—C7—C6−179.2 (3)C4—C5—S1—N179.1 (2)
N2—C8—C9—C103.7 (4)C6—C5—S1—N1−100.9 (2)
N2—C8—C9—C14−179.3 (2)O2—S1—N1—N257.70 (19)
C14—C9—C10—C11−1.6 (4)O1—S1—N1—N2−174.64 (16)
C8—C9—C10—C11175.4 (2)C5—S1—N1—N2−57.77 (18)
C9—C10—C11—C120.1 (4)C9—C8—N2—N1−178.3 (2)
C10—C11—C12—C131.3 (4)S1—N1—N2—C8172.28 (18)
C10—C11—C12—Cl1−176.2 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.88 (2)2.13 (2)2.952 (3)156 (2)
C1—H1A···O1ii0.962.553.496 (5)169
C13—H13···Cgiii0.932.943.823 (3)160
Table 1

Hydrogen-bond geometry (, )

Cg is the centroid of the C2C7 ring.

DHA DHHA D A DHA
N1H1O2i 0.88(2)2.13(2)2.952(3)156(2)
C1H1AO1ii 0.962.553.496(5)169
C13H13Cg iii 0.932.943.823(3)160

Symmetry codes: (i) ; (ii) ; (iii) .

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