| Literature DB >> 25552986 |
Daron E Janzen1, Arianna M Kooyman1, Kayla A Lange1.
Abstract
The title compounds, C36H28OP2S2, (1), and C36H28OP2Se2, (2), exhibit remarkably similar structures although they are not isomorphous. The whole mol-ecule of compound (2) is generated by twofold symmetry, with the ether O atom located on the twofold axis. Both compounds have intra-molecular π-π inter-actions between terminal phenyl rings with centroid-centroid distances of 3.6214 (16) and 3.8027 (14) Å in (1) and (2), respectively. In the crystal of (1), short C-H⋯S hydrogen bonds link the mol-ecules, forming chains along [001], while in (2) there are no analogous C-H⋯Se inter-actions present.Entities:
Keywords: crystal structure; functionalization of diphosphines; phosphine selenide; phosphine sulfide; π–π interactions
Year: 2014 PMID: 25552986 PMCID: PMC4257402 DOI: 10.1107/S1600536814023988
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
Figure 1The molecular structure of (1), showing the atom labelling and displacement ellipsoids drawn at the 50% probability level.
Figure 2The molecular structure of (2), showing the atom labelling and displacement ellipsoids drawn at the 50% probability level. [Symmetry code: (i) −x, y, −z + .]
Figure 3Structural overlay of (1) (red) and (2) (blue).
Figure 4Intramolecular π–π interactions in (1) and (2).
Hydrogen-bond geometry (, ) for (1)
Cg4 is the centroid of ring C19C24.
|
|
| H |
|
|
|---|---|---|---|---|
| C11H11S2i | 0.95 | 2.82 | 3.696(2) | 153 |
| C4H4S2ii | 0.95 | 2.94 | 3.698(3) | 138 |
| C5H5S1iii | 0.95 | 2.93 | 3.796(3) | 152 |
| C9H9 | 0.95 | 2.94 | 3.598(3) | 127 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 5Intermolecular C—H⋯S interactions in (1). [Symmetry codes: (i) x + , −y + , −z + 1; (ii) x, −y + , z + .]
Hydrogen-bond geometry (, ) for (2)
Cg2 and Cg3 are the centroids of rings C7C12 and C13C18, respectively.
|
|
| H |
|
|
|---|---|---|---|---|
| C5H5 | 0.95 | 2.63 | 3.546(3) | 161 |
| C9H9 | 0.95 | 2.94 | 3.676(3) | 135 |
Symmetry codes: (i) ; (ii) .
Figure 6Crystal packing of (1), viewed along [010] (above) and [100] (below). Color to highlight molecules packing within columns.
Figure 7Crystal packing of (2) viewed along [101] (above) and [010] (below). Color to highlight molecules packing within columns.
Experimental details
| (1) | (2) | |
|---|---|---|
| Crystal data | ||
| Chemical formula | C36H28OP2S2 | C36H28OP2Se2 |
|
| 602.64 | 696.44 |
| Crystal system, space group | Orthorhombic, | Monoclinic, |
| Temperature (K) | 173 | 173 |
|
| 14.1161(9), 18.0874(12), 23.1986(16) | 14.0964(15), 13.0854(13), 17.5918(18) |
| , , () | 90, 90, 90 | 90, 109.226(8), 90 |
|
| 5923.1(7) | 3064.0(6) |
|
| 8 | 4 |
| Radiation type | Mo | Mo |
| (mm1) | 0.32 | 2.55 |
| Crystal size (mm) | 0.52 0.24 0.12 | 0.80 0.12 0.12 |
| Data collection | ||
| Diffractometer | Rigaku XtaLAB mini | Rigaku XtaLAB mini |
| Absorption correction | Multi-scan ( | Multi-scan ( |
|
| 0.718, 0.963 | 0.556, 0.737 |
| No. of measured, independent and observed [ | 54343, 6050, 4671 | 15840, 3521, 2958 |
|
| 0.073 | 0.045 |
| (sin /)max (1) | 0.625 | 0.649 |
| Refinement | ||
|
| 0.045, 0.101, 1.07 | 0.032, 0.066, 1.07 |
| No. of reflections | 6050 | 3521 |
| No. of parameters | 370 | 186 |
| H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
| max, min (e 3) | 0.37, 0.33 | 0.40, 0.41 |
Computer programs: CrystalClear-SM Expert (Rigaku Americas and Rigaku, 2011 ▶), SIR2004 (Burla et al., 2005 ▶), SHELXL2013 (Sheldrick, 2008 ▶), ORTEP-3 for Windows (Farrugia, 2012 ▶) and CrystalStructure (Rigaku, 2010 ▶).
| C36H28OP2Se2 | |
| Monoclinic, | Mo |
| Cell parameters from 13788 reflections | |
| θ = 3.1–27.6° | |
| µ = 2.55 mm−1 | |
| β = 109.226 (8)° | |
| Prism, colorless | |
| 0.80 × 0.12 × 0.12 mm |
| Rigaku XtaLAB mini diffractometer | 3521 independent reflections |
| Radiation source: normal-focus sealed tube | 2958 reflections with |
| Detector resolution: 6.849 pixels mm-1 | |
| ω scans | θmax = 27.5°, θmin = 3.1° |
| Absorption correction: multi-scan ( | |
| 15840 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 3521 reflections | Δρmax = 0.40 e Å−3 |
| 186 parameters | Δρmin = −0.41 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Se1 | 0.15497 (2) | 0.31054 (2) | 0.63637 (2) | 0.02846 (8) | |
| P1 | −0.00071 (4) | 0.28040 (4) | 0.58870 (3) | 0.01801 (12) | |
| O1 | 0.0000 | 0.35271 (16) | 0.7500 | 0.0191 (4) | |
| C1 | −0.03973 (16) | 0.15982 (16) | 0.61952 (12) | 0.0201 (5) | |
| C2 | −0.10828 (17) | 0.15221 (18) | 0.66065 (14) | 0.0267 (5) | |
| H2 | −0.1341 | 0.2123 | 0.6770 | 0.032* | |
| C3 | −0.13892 (19) | 0.0569 (2) | 0.67788 (15) | 0.0336 (6) | |
| H3 | −0.1859 | 0.0521 | 0.7060 | 0.040* | |
| C4 | −0.10223 (19) | −0.03063 (19) | 0.65480 (15) | 0.0338 (6) | |
| H4 | −0.1242 | −0.0956 | 0.6665 | 0.041* | |
| C5 | −0.0331 (2) | −0.02409 (19) | 0.61439 (15) | 0.0333 (6) | |
| H5 | −0.0075 | −0.0846 | 0.5985 | 0.040* | |
| C6 | −0.00137 (18) | 0.07029 (18) | 0.59724 (14) | 0.0284 (5) | |
| H6 | 0.0468 | 0.0745 | 0.5702 | 0.034* | |
| C7 | −0.04357 (15) | 0.27085 (16) | 0.47944 (12) | 0.0189 (4) | |
| C8 | −0.13290 (16) | 0.22060 (18) | 0.43821 (13) | 0.0238 (5) | |
| H8 | −0.1715 | 0.1900 | 0.4673 | 0.029* | |
| C9 | −0.16556 (16) | 0.21505 (18) | 0.35504 (14) | 0.0264 (5) | |
| H9 | −0.2261 | 0.1801 | 0.3272 | 0.032* | |
| C10 | −0.11013 (18) | 0.26041 (18) | 0.31268 (14) | 0.0276 (5) | |
| H10 | −0.1332 | 0.2576 | 0.2555 | 0.033* | |
| C11 | −0.02133 (19) | 0.30990 (19) | 0.35299 (14) | 0.0312 (6) | |
| H11 | 0.0168 | 0.3407 | 0.3235 | 0.037* | |
| C12 | 0.01247 (17) | 0.31487 (18) | 0.43633 (13) | 0.0255 (5) | |
| H12 | 0.0740 | 0.3484 | 0.4639 | 0.031* | |
| C13 | −0.07964 (15) | 0.37932 (16) | 0.60936 (12) | 0.0191 (4) | |
| C14 | −0.15170 (16) | 0.43227 (17) | 0.54724 (14) | 0.0237 (5) | |
| H14 | −0.1613 | 0.4148 | 0.4928 | 0.028* | |
| C15 | −0.20897 (16) | 0.50950 (17) | 0.56408 (15) | 0.0269 (5) | |
| H15 | −0.2571 | 0.5447 | 0.5213 | 0.032* | |
| C16 | −0.19615 (16) | 0.53555 (17) | 0.64311 (15) | 0.0267 (5) | |
| H16 | −0.2361 | 0.5880 | 0.6545 | 0.032* | |
| C17 | −0.12510 (16) | 0.48518 (17) | 0.70579 (14) | 0.0227 (5) | |
| H17 | −0.1160 | 0.5031 | 0.7601 | 0.027* | |
| C18 | −0.06746 (15) | 0.40848 (16) | 0.68848 (13) | 0.0188 (4) |
| Se1 | 0.01582 (11) | 0.04058 (16) | 0.02624 (13) | −0.00167 (10) | 0.00320 (9) | −0.00400 (11) |
| P1 | 0.0159 (3) | 0.0209 (3) | 0.0167 (3) | −0.0006 (2) | 0.0045 (2) | 0.0003 (2) |
| O1 | 0.0205 (10) | 0.0157 (10) | 0.0196 (10) | 0.000 | 0.0047 (9) | 0.000 |
| C1 | 0.0214 (11) | 0.0192 (11) | 0.0178 (10) | 0.0017 (8) | 0.0037 (9) | 0.0022 (8) |
| C2 | 0.0281 (12) | 0.0227 (12) | 0.0325 (13) | −0.0018 (9) | 0.0142 (11) | −0.0006 (10) |
| C3 | 0.0355 (14) | 0.0317 (15) | 0.0396 (15) | −0.0068 (11) | 0.0202 (12) | 0.0012 (11) |
| C4 | 0.0409 (14) | 0.0209 (13) | 0.0363 (14) | −0.0047 (11) | 0.0084 (12) | 0.0064 (10) |
| C5 | 0.0453 (15) | 0.0202 (13) | 0.0329 (13) | 0.0092 (11) | 0.0108 (12) | 0.0022 (10) |
| C6 | 0.0312 (13) | 0.0279 (13) | 0.0281 (12) | 0.0063 (10) | 0.0126 (10) | 0.0038 (10) |
| C7 | 0.0194 (10) | 0.0193 (11) | 0.0172 (10) | −0.0004 (8) | 0.0047 (8) | 0.0005 (8) |
| C8 | 0.0191 (11) | 0.0285 (13) | 0.0233 (11) | −0.0044 (9) | 0.0064 (9) | −0.0018 (9) |
| C9 | 0.0192 (11) | 0.0282 (13) | 0.0272 (12) | −0.0004 (9) | 0.0013 (9) | −0.0034 (10) |
| C10 | 0.0347 (13) | 0.0273 (13) | 0.0178 (11) | 0.0008 (10) | 0.0047 (10) | 0.0019 (9) |
| C11 | 0.0386 (14) | 0.0326 (14) | 0.0244 (12) | −0.0083 (11) | 0.0129 (11) | 0.0066 (10) |
| C12 | 0.0253 (11) | 0.0257 (12) | 0.0246 (11) | −0.0089 (10) | 0.0071 (9) | 0.0002 (10) |
| C13 | 0.0170 (10) | 0.0166 (11) | 0.0225 (11) | −0.0018 (8) | 0.0049 (9) | 0.0009 (9) |
| C14 | 0.0208 (11) | 0.0234 (12) | 0.0240 (11) | −0.0027 (9) | 0.0035 (9) | 0.0032 (9) |
| C15 | 0.0191 (11) | 0.0208 (12) | 0.0353 (13) | 0.0007 (9) | 0.0018 (10) | 0.0059 (10) |
| C16 | 0.0199 (11) | 0.0184 (12) | 0.0411 (14) | 0.0014 (9) | 0.0091 (10) | −0.0010 (10) |
| C17 | 0.0215 (11) | 0.0192 (11) | 0.0282 (12) | −0.0038 (9) | 0.0090 (10) | −0.0029 (9) |
| C18 | 0.0167 (10) | 0.0161 (11) | 0.0232 (11) | −0.0028 (8) | 0.0058 (9) | 0.0027 (8) |
| Se1—P1 | 2.1125 (6) | C8—C9 | 1.384 (3) |
| P1—C1 | 1.812 (2) | C8—H8 | 0.9500 |
| P1—C7 | 1.819 (2) | C9—C10 | 1.379 (3) |
| P1—C13 | 1.820 (2) | C9—H9 | 0.9500 |
| O1—C18 | 1.389 (2) | C10—C11 | 1.380 (3) |
| O1—C18i | 1.389 (2) | C10—H10 | 0.9500 |
| C1—C2 | 1.388 (3) | C11—C12 | 1.386 (3) |
| C1—C6 | 1.399 (3) | C11—H11 | 0.9500 |
| C2—C3 | 1.385 (3) | C12—H12 | 0.9500 |
| C2—H2 | 0.9500 | C13—C18 | 1.398 (3) |
| C3—C4 | 1.372 (4) | C13—C14 | 1.405 (3) |
| C3—H3 | 0.9500 | C14—C15 | 1.385 (3) |
| C4—C5 | 1.385 (4) | C14—H14 | 0.9500 |
| C4—H4 | 0.9500 | C15—C16 | 1.384 (3) |
| C5—C6 | 1.380 (3) | C15—H15 | 0.9500 |
| C5—H5 | 0.9500 | C16—C17 | 1.388 (3) |
| C6—H6 | 0.9500 | C16—H16 | 0.9500 |
| C7—C12 | 1.387 (3) | C17—C18 | 1.387 (3) |
| C7—C8 | 1.394 (3) | C17—H17 | 0.9500 |
| C1—P1—C7 | 103.20 (10) | C10—C9—C8 | 119.9 (2) |
| C1—P1—C13 | 107.09 (10) | C10—C9—H9 | 120.1 |
| C7—P1—C13 | 104.34 (10) | C8—C9—H9 | 120.1 |
| C1—P1—Se1 | 114.95 (7) | C9—C10—C11 | 120.2 (2) |
| C7—P1—Se1 | 111.86 (7) | C9—C10—H10 | 119.9 |
| C13—P1—Se1 | 114.30 (7) | C11—C10—H10 | 119.9 |
| C18—O1—C18i | 116.6 (2) | C10—C11—C12 | 120.2 (2) |
| C2—C1—C6 | 119.0 (2) | C10—C11—H11 | 119.9 |
| C2—C1—P1 | 123.39 (17) | C12—C11—H11 | 119.9 |
| C6—C1—P1 | 117.51 (17) | C11—C12—C7 | 120.0 (2) |
| C3—C2—C1 | 119.9 (2) | C11—C12—H12 | 120.0 |
| C3—C2—H2 | 120.0 | C7—C12—H12 | 120.0 |
| C1—C2—H2 | 120.0 | C18—C13—C14 | 117.4 (2) |
| C4—C3—C2 | 120.8 (2) | C18—C13—P1 | 120.67 (16) |
| C4—C3—H3 | 119.6 | C14—C13—P1 | 121.89 (17) |
| C2—C3—H3 | 119.6 | C15—C14—C13 | 121.1 (2) |
| C3—C4—C5 | 119.8 (2) | C15—C14—H14 | 119.5 |
| C3—C4—H4 | 120.1 | C13—C14—H14 | 119.5 |
| C5—C4—H4 | 120.1 | C16—C15—C14 | 120.1 (2) |
| C6—C5—C4 | 120.1 (2) | C16—C15—H15 | 119.9 |
| C6—C5—H5 | 120.0 | C14—C15—H15 | 119.9 |
| C4—C5—H5 | 120.0 | C15—C16—C17 | 120.2 (2) |
| C5—C6—C1 | 120.3 (2) | C15—C16—H16 | 119.9 |
| C5—C6—H6 | 119.8 | C17—C16—H16 | 119.9 |
| C1—C6—H6 | 119.8 | C18—C17—C16 | 119.4 (2) |
| C12—C7—C8 | 119.4 (2) | C18—C17—H17 | 120.3 |
| C12—C7—P1 | 119.88 (16) | C16—C17—H17 | 120.3 |
| C8—C7—P1 | 120.72 (16) | C17—C18—O1 | 120.62 (19) |
| C9—C8—C7 | 120.3 (2) | C17—C18—C13 | 121.83 (19) |
| C9—C8—H8 | 119.9 | O1—C18—C13 | 117.40 (18) |
| C7—C8—H8 | 119.9 | ||
| C7—P1—C1—C2 | −117.40 (19) | C9—C10—C11—C12 | −0.4 (4) |
| C13—P1—C1—C2 | −7.6 (2) | C10—C11—C12—C7 | −0.6 (4) |
| Se1—P1—C1—C2 | 120.53 (18) | C8—C7—C12—C11 | 1.0 (4) |
| C7—P1—C1—C6 | 59.79 (19) | P1—C7—C12—C11 | −178.38 (19) |
| C13—P1—C1—C6 | 169.57 (17) | C1—P1—C13—C18 | 71.55 (19) |
| Se1—P1—C1—C6 | −62.27 (18) | C7—P1—C13—C18 | −179.48 (17) |
| C6—C1—C2—C3 | −1.0 (3) | Se1—P1—C13—C18 | −57.00 (18) |
| P1—C1—C2—C3 | 176.11 (18) | C1—P1—C13—C14 | −111.23 (18) |
| C1—C2—C3—C4 | 0.1 (4) | C7—P1—C13—C14 | −2.2 (2) |
| C2—C3—C4—C5 | 0.5 (4) | Se1—P1—C13—C14 | 120.23 (16) |
| C3—C4—C5—C6 | −0.1 (4) | C18—C13—C14—C15 | −0.7 (3) |
| C4—C5—C6—C1 | −0.9 (4) | P1—C13—C14—C15 | −177.99 (17) |
| C2—C1—C6—C5 | 1.5 (3) | C13—C14—C15—C16 | −0.3 (3) |
| P1—C1—C6—C5 | −175.86 (18) | C14—C15—C16—C17 | 0.7 (3) |
| C1—P1—C7—C12 | −145.39 (19) | C15—C16—C17—C18 | −0.2 (3) |
| C13—P1—C7—C12 | 102.79 (19) | C16—C17—C18—O1 | −176.18 (19) |
| Se1—P1—C7—C12 | −21.3 (2) | C16—C17—C18—C13 | −0.8 (3) |
| C1—P1—C7—C8 | 35.3 (2) | C18i—O1—C18—C17 | −51.46 (16) |
| C13—P1—C7—C8 | −76.5 (2) | C18i—O1—C18—C13 | 132.9 (2) |
| Se1—P1—C7—C8 | 159.41 (16) | C14—C13—C18—C17 | 1.2 (3) |
| C12—C7—C8—C9 | −0.3 (3) | P1—C13—C18—C17 | 178.56 (16) |
| P1—C7—C8—C9 | 179.05 (17) | C14—C13—C18—O1 | 176.74 (17) |
| C7—C8—C9—C10 | −0.7 (3) | P1—C13—C18—O1 | −5.9 (3) |
| C8—C9—C10—C11 | 1.1 (4) |
| H··· | ||||
| C5—H5··· | 0.95 | 2.63 | 3.546 (3) | 161 |
| C9—H9··· | 0.95 | 2.94 | 3.676 (3) | 135 |