Literature DB >> 25545689

VennDIS: a JavaFX-based Venn and Euler diagram software to generate publication quality figures.

Vladimir Ignatchenko1, Alexandr Ignatchenko, Ankit Sinha, Paul C Boutros, Thomas Kislinger.   

Abstract

Venn diagrams are graphical representations of the relationships among multiple sets of objects and are often used to illustrate similarities and differences among genomic and proteomic datasets. All currently existing tools for producing Venn diagrams evince one of two traits; they require expertise in specific statistical software packages (such as R), or lack the flexibility required to produce publication-quality figures. We describe a simple tool that addresses both shortcomings, Venn Diagram Interactive Software (VennDIS), a JavaFX-based solution for producing highly customizable, publication-quality Venn, and Euler diagrams of up to five sets. The strengths of VennDIS are its simple graphical user interface and its large array of customization options, including the ability to modify attributes such as font, style and position of the labels, background color, size of the circle/ellipse, and outline color. It is platform independent and provides real-time visualization of figure modifications. The created figures can be saved as XML files for future modification or exported as high-resolution images for direct use in publications.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  Bioinformatics / Data visualization software / Euler diagram / Venn diagram

Mesh:

Year:  2015        PMID: 25545689     DOI: 10.1002/pmic.201400320

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  14 in total

1.  Unique Transcriptional Architecture in Airway Epithelial Cells and Macrophages Shapes Distinct Responses following Influenza Virus Infection Ex Vivo.

Authors:  Joel Z Ma; Wy Ching Ng; Luke Zappia; Linden J Gearing; Moshe Olshansky; Kym Pham; Karey Cheong; Arthur Hsu; Stephen J Turner; Odilia Wijburg; Sarah L Londrigan; Andrew G Brooks; Patrick C Reading
Journal:  J Virol       Date:  2019-03-05       Impact factor: 5.103

2.  Comparison of the effects of pachymic acid, moronic acid and hydrocortisone on the polysome loading of RNAs in lipopolysaccharide-treated THP-1 macrophages.

Authors:  Tomohito Kakegawa; Lucia Satiko Yoshida; Mariko Takada; Mari Noguchi; Ken Yasukawa; Hiromi Takano-Ohmuro
Journal:  J Nat Med       Date:  2018-11-09       Impact factor: 2.343

3.  Shikonin changes the lipopolysaccharide-induced expression of inflammation-related genes in macrophages.

Authors:  Lucia Satiko Yoshida; Tomohito Kakegawa; Yasukatsu Yuda; Hiromi Takano-Ohmuro
Journal:  J Nat Med       Date:  2017-07-11       Impact factor: 2.343

4.  Human cardiac organoids for the modelling of myocardial infarction and drug cardiotoxicity.

Authors:  Dylan J Richards; Yang Li; Charles M Kerr; Jenny Yao; Gyda C Beeson; Robert C Coyle; Xun Chen; Jia Jia; Brooke Damon; Robert Wilson; E Starr Hazard; Gary Hardiman; Donald R Menick; Craig C Beeson; Hai Yao; Tong Ye; Ying Mei
Journal:  Nat Biomed Eng       Date:  2020-04-13       Impact factor: 25.671

5.  Anti-inflammatory effects of alpinone 3-acetate from Alpinia japonica seeds.

Authors:  Tomohito Kakegawa; Aya Miyazaki; Ken Yasukawa
Journal:  J Nat Med       Date:  2016-05-02       Impact factor: 2.343

6.  MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets.

Authors:  Urminder Singh; Manhoi Hur; Karin Dorman; Eve Syrkin Wurtele
Journal:  Nucleic Acids Res       Date:  2020-02-28       Impact factor: 16.971

7.  Systematic profiling of poly(A)+ transcripts modulated by core 3' end processing and splicing factors reveals regulatory rules of alternative cleavage and polyadenylation.

Authors:  Wencheng Li; Bei You; Mainul Hoque; Dinghai Zheng; Wenting Luo; Zhe Ji; Ji Yeon Park; Samuel I Gunderson; Auinash Kalsotra; James L Manley; Bin Tian
Journal:  PLoS Genet       Date:  2015-04-23       Impact factor: 5.917

8.  Comparative Analysis of Vertebrate Diurnal/Circadian Transcriptomes.

Authors:  Greg Boyle; Kerstin Richter; Henry D Priest; David Traver; Todd C Mockler; Jeffrey T Chang; Steve A Kay; Ghislain Breton
Journal:  PLoS One       Date:  2017-01-11       Impact factor: 3.240

9.  Secondary metabolite genes encoded by potato rhizosphere microbiomes in the Andean highlands are diverse and vary with sampling site and vegetation stage.

Authors:  Gajender Aleti; Branislav Nikolić; Günter Brader; Ram Vinay Pandey; Livio Antonielli; Stefan Pfeiffer; Andreas Oswald; Angela Sessitsch
Journal:  Sci Rep       Date:  2017-05-24       Impact factor: 4.379

10.  FD5180, a Novel Protein Kinase Affinity Probe, and the Effect of Bead Loading on Protein Kinase Identification.

Authors:  Fiona M Deane; Andrew J S Lin; Peter G Hains; Sarah L Pilgrim; Phillip J Robinson; Adam McCluskey
Journal:  ACS Omega       Date:  2017-07-25
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