Literature DB >> 25544563

Global mapping of herpesvirus-host protein complexes reveals a transcription strategy for late genes.

Zoe H Davis1, Erik Verschueren2, Gwendolyn M Jang2, Kevin Kleffman3, Jeffrey R Johnson2, Jimin Park3, John Von Dollen2, M Cyrus Maher4, Tasha Johnson2, William Newton2, Stefanie Jäger2, Michael Shales2, Julie Horner5, Ryan D Hernandez6, Nevan J Krogan7, Britt A Glaunsinger8.   

Abstract

Mapping host-pathogen interactions has proven instrumental for understanding how viruses manipulate host machinery and how numerous cellular processes are regulated. DNA viruses such as herpesviruses have relatively large coding capacity and thus can target an extensive network of cellular proteins. To identify the host proteins hijacked by this pathogen, we systematically affinity tagged and purified all 89 proteins of Kaposi's sarcoma-associated herpesvirus (KSHV) from human cells. Mass spectrometry of this material identified over 500 virus-host interactions. KSHV causes AIDS-associated cancers, and its interaction network is enriched for proteins linked to cancer and overlaps with proteins that are also targeted by HIV-1. We found that the conserved KSHV protein ORF24 binds to RNA polymerase II and brings it to viral late promoters by mimicking and replacing cellular TATA-box-binding protein (TBP). This is required for herpesviral late gene expression, a complex and poorly understood phase of the viral lifecycle.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 25544563      PMCID: PMC4305015          DOI: 10.1016/j.molcel.2014.11.026

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  46 in total

1.  ORF18 is a transfactor that is essential for late gene transcription of a gammaherpesvirus.

Authors:  Vaithilingaraja Arumugaswami; Ting-Ting Wu; DeeAnn Martinez-Guzman; Qingmei Jia; Hongyu Deng; Nichole Reyes; Ren Sun
Journal:  J Virol       Date:  2006-10       Impact factor: 5.103

Review 2.  The general transcription machinery and general cofactors.

Authors:  Mary C Thomas; Cheng-Ming Chiang
Journal:  Crit Rev Biochem Mol Biol       Date:  2006 May-Jun       Impact factor: 8.250

3.  Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells.

Authors:  Imke Listerman; Aparna K Sapra; Karla M Neugebauer
Journal:  Nat Struct Mol Biol       Date:  2006-08-20       Impact factor: 15.369

4.  Association of herpes simplex virus type 1 ICP8 and ICP27 proteins with cellular RNA polymerase II holoenzyme.

Authors:  Changhong Zhou; David M Knipe
Journal:  J Virol       Date:  2002-06       Impact factor: 5.103

5.  Baculovirus P35 interacts with a subunit of human RNA polymerase II and can enhance promoter activity in human cells.

Authors:  David Takramah; Barbara M Seiffert; Sophie Schaller; Marc Vigneron; Georg Häcker
Journal:  J Gen Virol       Date:  2003-11       Impact factor: 3.891

6.  Epstein-Barr virus late gene transcription depends on the assembly of a virus-specific preinitiation complex.

Authors:  Valentin Aubry; Fabrice Mure; Bernard Mariamé; Thibaut Deschamps; Lucjan S Wyrwicz; Evelyne Manet; Henri Gruffat
Journal:  J Virol       Date:  2014-08-27       Impact factor: 5.103

7.  Requirement of a 12-base-pair TATT-containing sequence and viral lytic DNA replication in activation of the Kaposi's sarcoma-associated herpesvirus K8.1 late promoter.

Authors:  Shuang Tang; Koji Yamanegi; Zhi-Ming Zheng
Journal:  J Virol       Date:  2004-03       Impact factor: 5.103

8.  Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms.

Authors:  David A Bushnell; Kenneth D Westover; Ralph E Davis; Roger D Kornberg
Journal:  Science       Date:  2004-02-13       Impact factor: 47.728

9.  Murine gammaherpesvirus 68 open reading frame 31 is required for viral replication.

Authors:  Qingmei Jia; Ting-Ting Wu; Hsiang-I Liao; Vasili Chernishof; Ren Sun
Journal:  J Virol       Date:  2004-06       Impact factor: 5.103

10.  A map of recent positive selection in the human genome.

Authors:  Benjamin F Voight; Sridhar Kudaravalli; Xiaoquan Wen; Jonathan K Pritchard
Journal:  PLoS Biol       Date:  2006-03-07       Impact factor: 8.029

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  106 in total

Review 1.  Comparative mapping of host-pathogen protein-protein interactions.

Authors:  Priya S Shah; Jason A Wojcechowskyj; Manon Eckhardt; Nevan J Krogan
Journal:  Curr Opin Microbiol       Date:  2015-08-10       Impact factor: 7.934

2.  ORF45-Mediated Prolonged c-Fos Accumulation Accelerates Viral Transcription during the Late Stage of Lytic Replication of Kaposi's Sarcoma-Associated Herpesvirus.

Authors:  Xiaojuan Li; Shumin Du; Denis Avey; Yuqing Li; Fanxiu Zhu; Ersheng Kuang
Journal:  J Virol       Date:  2015-04-22       Impact factor: 5.103

3.  The Epstein-Barr Virus BMRF1 Protein Activates Transcription and Inhibits the DNA Damage Response by Binding NuRD.

Authors:  Samuel G Salamun; Justine Sitz; Carlos F De La Cruz-Herrera; Jaime Yockteng-Melgar; Edyta Marcon; Jack Greenblatt; Amelie Fradet-Turcotte; Lori Frappier
Journal:  J Virol       Date:  2019-10-29       Impact factor: 5.103

Review 4.  Methods, Tools and Current Perspectives in Proteogenomics.

Authors:  Kelly V Ruggles; Karsten Krug; Xiaojing Wang; Karl R Clauser; Jing Wang; Samuel H Payne; David Fenyö; Bing Zhang; D R Mani
Journal:  Mol Cell Proteomics       Date:  2017-04-29       Impact factor: 5.911

5.  Proteomic and phylogenetic coevolution analyses of pM79 and pM92 identify interactions with RNA polymerase II and delineate the murine cytomegalovirus late transcription complex.

Authors:  Travis J Chapa; Yushen Du; Ren Sun; Dong Yu; Anthony R French
Journal:  J Gen Virol       Date:  2017-02-12       Impact factor: 3.891

6.  The HIV-1 Tat protein recruits a ubiquitin ligase to reorganize the 7SK snRNP for transcriptional activation.

Authors:  Tyler B Faust; Yang Li; Curtis W Bacon; Gwendolyn M Jang; Amit Weiss; Bhargavi Jayaraman; Billy W Newton; Nevan J Krogan; Iván D'Orso; Alan D Frankel
Journal:  Elife       Date:  2018-05-30       Impact factor: 8.140

Review 7.  A systems approach to infectious disease.

Authors:  Manon Eckhardt; Judd F Hultquist; Robyn M Kaake; Ruth Hüttenhain; Nevan J Krogan
Journal:  Nat Rev Genet       Date:  2020-02-14       Impact factor: 53.242

8.  A CRISPR-Cas9 screen identifies mitochondrial translation as an essential process in latent KSHV infection of human endothelial cells.

Authors:  Daniel L Holmes; Daniel T Vogt; Michael Lagunoff
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-29       Impact factor: 11.205

Review 9.  An Epigenetic Journey: Epstein-Barr Virus Transcribes Chromatinized and Subsequently Unchromatinized Templates during Its Lytic Cycle.

Authors:  Adityarup Chakravorty; Bill Sugden; Eric C Johannsen
Journal:  J Virol       Date:  2019-04-03       Impact factor: 5.103

10.  S-Like-Phase Cyclin-Dependent Kinases Stabilize the Epstein-Barr Virus BDLF4 Protein To Temporally Control Late Gene Transcription.

Authors:  Yoshitaka Sato; Takahiro Watanabe; Chihiro Suzuki; Yuichi Abe; H M Abdullah Al Masud; Tomoki Inagaki; Masahiro Yoshida; Takeshi Suzuki; Fumi Goshima; Jun Adachi; Takeshi Tomonaga; Takayuki Murata; Hiroshi Kimura
Journal:  J Virol       Date:  2019-04-03       Impact factor: 5.103

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