| Literature DB >> 25540125 |
Iris Schöberl1, Kim Kortekaas2,3, Franz F Schöberl4, Kurt Kotrschal2,3,5.
Abstract
Dog heart rate (HR) is characterized by a respiratory sinus arrhythmia, and therefore makes an automatic algorithm for error correction of HR measurements hard to apply. Here, we present a new method of error correction for HR data collected with the Polar system, including (1) visual inspection of the data, (2) a standardized way to decide with the aid of an algorithm whether or not a value is an outlier (i.e., "error"), and (3) the subsequent removal of this error from the data set. We applied our new error correction method to the HR data of 24 dogs and compared the uncorrected and corrected data, as well as the algorithm-supported visual error correction (AVEC) with the Polar error correction. The results showed that fewer values were identified as errors after AVEC than after the Polar error correction (p < .001). After AVEC, the HR standard deviation and variability (HRV; i.e., RMSSD, pNN50, and SDNN) were significantly greater than after correction by the Polar tool (all p < .001). Furthermore, the HR data strings with deleted values seemed to be closer to the original data than were those with inserted means. We concluded that our method of error correction is more suitable for dog HR and HR variability than is the customized Polar error correction, especially because AVEC decreases the likelihood of Type I errors, preserves the natural variability in HR, and does not lead to a time shift in the data.Entities:
Keywords: Domestic dog; Error correction; Heart rate
Mesh:
Year: 2015 PMID: 25540125 PMCID: PMC4636529 DOI: 10.3758/s13428-014-0546-z
Source DB: PubMed Journal: Behav Res Methods ISSN: 1554-351X
Fig. 1Graphical representation of heart rate (HR) values for visual inspection of a data set. (A) Dog HR from one complete threat situation, including the pacification and 5-min recovery periods. (B) Parts of Graph A, divided into blocks of 200 data points. (C) a. Value 14 (157 bpm) was identified as an error by the algorithm. b. Values 239 (238 bpm) and 240 (102 bpm) were deleted as errors after visual inspection, because of their clear discontinuity with the preceding and following values. c. Value 313 (63 bpm) was identified as an error by the algorithm
Comparison of heart rate (HR) and heart rate variability (HRV) data for the Threat 2 situation, before and after both the AVEC and Polar error correction
| HR Parameters | After Polar Compared With After AVEC | Before Correction Compared With After Polar | Before Correction Compared With After AVEC |
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| Standard deviation (bpm) |
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| pNN50 (%) |
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Student’s paired t test was used if the data were normally distributed, otherwise the Wilcoxon signed-rank test was used (n = 24 for all tests).
Significant results are given in bold.
Fig. 2Heart rate (HR) both before (red) and after (blue) error correction using the AVEC method (Aa and Ab) and using the Polar error correction (Ba and Bb) for two different dogs. (A) Using the AVEC method: a. Dog 9 showed 0.56 % identified errors within the HR data; b. Dog 13 showed 0.75 % identified errors within the HR data. (B) With the Polar error correction method: a. 0.8 % errors were identified for the HR data of Dog 9; b. 20.5 % errors were identified for the HR data of Dog 13
Comparison of heart rate and heart rate variability raw data for the Threat 2 situation, before and after the AVEC and the Polar error corrections
| Dog | % Errors AVEC | Standard Deviation | Mean | Median | SDNN | RMSSD | pNN50 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| After AVEC | After Polar | Before Correction | After AVEC | After Polar | Before Correction | After AVEC | After Polar | Before Correction | After AVEC | After Polar | Before Correction | After AVEC | After Polar | Before Correction | After AVEC | After Polar | Before Correction | After AVEC | After Polar | |
| 1 | 1.39 | 4.30 | 22.03 | 20.71 | 19.87 | 118.32 | 117.96 | 118.00 | 115.00 | 115.00 | 116.00 | 92.10 | 85.70 | 84.10 | 59.00 | 26.50 | 24.60 | 8.10 | 6.40 | 6.20 |
| 2 | 1.25 | 37.00 | 27.45 | 27.30 | 21.85 | 107.06 | 107.06 | 110.00 | 106.00 | 106.00 | 109.00 | 179.60 | 179.00 | 116.50 | 170.60 | 164.30 | 63.30 | 53.20 | 52.00 | 23.60 |
| 3 | 1.65 | 28.40 | 30.91 | 31.04 | 31.18 | 85.50 | 85.84 | 85.99 | 87.00 | 87.00 | 89.00 | 354.30 | 356.70 | 359.10 | 308.40 | 306.90 | 174.40 | 59.10 | 58.20 | 40.90 |
| 4 | 0.53 | 45.80 | 27.80 | 27.26 | 13.99 | 84.86 | 85.00 | 88.00 | 85.00 | 85.00 | 88.00 | 282.20 | 277.40 | 125.20 | 330.70 | 321.80 | 100.20 | 63.70 | 63.30 | 29.40 |
| 5 | 1.29 | 9.80 | 22.48 | 19.47 | 19.97 | 89.37 | 88.00 | 89.00 | 87.00 | 87.00 | 87.00 | 151.20 | 146.50 | 147.10 | 107.30 | 101.70 | 88.60 | 45.00 | 44.80 | 39.70 |
| 6 | 0.84 | 50.00 | 37.37 | 37.46 | 17.35 | 93.20 | 92.99 | 72.00 | 86.00 | 86.00 | 75.00 | 297.70 | 298.10 | 226.10 | 289.20 | 289.80 | 178.80 | 60.40 | 60.80 | 49.10 |
| 7 | 1.26 | 33.80 | 42.31 | 41.72 | 20.71 | 115.40 | 115.21 | 103.00 | 106.00 | 106.00 | 99.00 | 208.20 | 202.10 | 132.50 | 194.20 | 176.30 | 102.90 | 42.80 | 41.70 | 29.60 |
| 8 | 0.15 | 29.30 | 43.06 | 43.06 | 28.25 | 108.24 | 108.00 | 99.00 | 99.00 | 99.00 | 97.00 | 249.30 | 249.40 | 206.90 | 185.00 | 184.90 | 122.50 | 49.30 | 49.20 | 41.30 |
| 9 | 0.56 | 0.80 | 22.62 | 22.00 | 22.10 | 107.49 | 107.31 | 107.39 | 102.00 | 102.00 | 102.00 | 101.80 | 100.20 | 101.20 | 44.70 | 38.90 | 40.80 | 15.80 | 15.20 | 15.00 |
| 10 | 0.23 | 39.50 | 18.99 | 18.71 | 18.85 | 124.22 | 124.51 | 136.00 | 122.00 | 123.00 | 134.00 | 77.50 | 68.50 | 62.50 | 53.70 | 21.20 | 12.80 | 3.20 | 2.90 | 0.90 |
| 11 | 1.61 | 55.60 | 35.44 | 34.81 | 36.59 | 111.79 | 112.08 | 127.64 | 107.00 | 107.00 | 120.00 | 194.70 | 190.10 | 139.50 | 132.90 | 118.70 | 40.40 | 36.90 | 35.50 | 9.10 |
| 12 | 0.54 | 13.00 | 34.60 | 34.01 | 28.86 | 109.42 | 109.33 | 106.02 | 102.00 | 102.00 | 102.50 | 192.60 | 181.40 | 173.00 | 121.20 | 85.10 | 90.10 | 31.80 | 31.40 | 28.90 |
| 13 | 0.75 | 20.50 | 23.31 | 22.80 | 17.86 | 95.59 | 96.04 | 101.12 | 98.00 | 98.00 | 101.00 | 234.70 | 199.00 | 135.10 | 311.60 | 262.80 | 132.50 | 55.70 | 55.20 | 31.90 |
| 14 | 4.52 | 34.10 | 88.91 | 37.17 | 23.47 | 119.06 | 119.04 | 116.44 | 112.50 | 113.00 | 113.00 | 545.90 | 173.00 | 121.40 | 508.30 | 152.30 | 63.30 | 42.40 | 39.70 | 16.90 |
| 15 | 0.93 | 58.70 | 35.37 | 32.82 | 24.42 | 142.00 | 142.38 | 162.12 | 133.00 | 134.00 | 168.00 | 188.60 | 86.20 | 63.80 | 180.60 | 34.80 | 10.50 | 10.90 | 9.90 | 0.80 |
| 16 | 1.51 | 12.10 | 26.65 | 25.49 | 19.72 | 80.65 | 80.38 | 77.89 | 72.00 | 72.00 | 72.00 | 218.30 | 207.70 | 182.90 | 158.90 | 131.00 | 100.00 | 45.30 | 44.10 | 41.30 |
| 17 | 1.38 | 22.00 | 20.13 | 20.02 | 16.76 | 95.56 | 95.22 | 92.50 | 90.00 | 90.00 | 88.00 | 131.70 | 131.30 | 115.10 | 107.70 | 106.20 | 90.20 | 56.40 | 56.10 | 49.10 |
| 18 | 0.93 | 12.30 | 17.47 | 17.10 | 16.01 | 98.48 | 98.26 | 98.12 | 98.00 | 98.00 | 98.00 | 114.40 | 113.10 | 104.70 | 129.40 | 124.90 | 108.80 | 58.10 | 57.50 | 49.10 |
| 19 | 0.58 | 15.10 | 33.11 | 32.68 | 14.68 | 102.70 | 102.72 | 94.52 | 95.00 | 95.00 | 94.00 | 156.30 | 145.60 | 105.90 | 128.70 | 96.50 | 74.80 | 36.70 | 35.90 | 33.50 |
| 20 | 0.87 | 19.00 | 20.24 | 19.64 | 15.63 | 85.61 | 86.09 | 86.85 | 86.00 | 86.00 | 86.00 | 226.20 | 189.90 | 141.40 | 269.20 | 109.40 | 139.10 | 62.90 | 62.20 | 47.60 |
| 21 | 1.29 | 44.70 | 37.32 | 36.24 | 25.37 | 77.87 | 77.55 | 68.92 | 67.00 | 67.00 | 62.00 | 409.70 | 386.40 | 366.90 | 433.60 | 419.60 | 352.50 | 76.30 | 75.80 | 55.70 |
| 22 | 0.95 | 11.80 | 20.54 | 19.84 | 17.96 | 90.27 | 90.82 | 90.70 | 88.00 | 88.00 | 88.00 | 195.20 | 153.80 | 140.80 | 218.50 | 150.00 | 131.10 | 49.40 | 48.40 | 42.50 |
| 23 | 1.84 | 26.30 | 32.76 | 31.21 | 25.64 | 111.96 | 111.08 | 110.67 | 106.00 | 105.00 | 108.00 | 168.60 | 157.00 | 131.60 | 140.70 | 115.80 | 69.90 | 33.60 | 31.80 | 21.70 |
| 24 | 1.03 | 22.20 | 33.14 | 32.60 | 18.21 | 114.87 | 115.27 | 104.91 | 108.00 | 108.00 | 104.00 | 152.10 | 139.50 | 108.30 | 119.00 | 83.90 | 80.80 | 39.90 | 38.80 | 36.80 |
Heart rate (HR, in bpm) of Dog 13 for the first 30 s during the Threat 2 situation, before error correction, after AVEC, and after the Polar error correction method
Bold values were corrected and added by the Polar tool. Shaded values illustrate the time shift
Percentages of changes in heart rate (HR) and heart rate variability (HRV) parameters of a single dog, when approximately 1 %, 2 %, 3 %, 4 %, and 5 % of the values in the data set were randomly deleted or replaced by a mean
| HR and HRV Parameters | % of Values Deleted | % of Values Replaced by Mean | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| 0.94 | 1.87 | 2.81 | 3.98 | 4.92 | 0.94 | 1.87 | 2.81 | 3.98 | 4.92 | |
| HR Mean | 0.21 | 0 | 0.10 | 0.10 | –0.21 | 0 | –0.10 | 0 | 0 | –0.10 |
| HR Median | 1.15 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| HR Standard deviation | 0 | 0 | 0.29 | 0.58 | 0.29 | –0.29 | –0.58 | –0.58 | –0.58 | –0.87 |
| SDNN | –0.71 | –0.92 | –0.59 | –0.25 | –0.21 | –0.88 | –1.38 | –1.43 | –1.43 | –1.64 |
| RMSSD | –1.04 | –0.79 | –0.35 | 0.20 | 0.65 | –1.19 | –1.49 | –1.39 | –1.24 | –1.24 |
| pNN50 | 0.17 | 0.86 | 1.90 | 1.55 | 1.72 | 0.34 | 1.55 | 2.41 | 2.41 | 2.24 |