Edrisse Chermak1, Andrea Petta1, Luigi Serra1, Anna Vangone1, Vittorio Scarano1, Luigi Cavallo1, Romina Oliva1. 1. Kaust Catalysis Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia, Dipartimento di Informatica ed Applicazioni, Department of Chemistry and Biology, University of Salerno, Fisciano, SA, Italy and Department of Sciences and Technologies, University "Parthenope" of Naples, Naples, Italy.
Abstract
SUMMARY: Herein, we present CONSRANK, a web tool for analyzing, comparing and ranking protein-protein and protein-nucleic acid docking models, based on the conservation of inter-residue contacts and its visualization in 2D and 3D interactive contact maps. AVAILABILITY AND IMPLEMENTATION: CONSRANK is accessible as a public web tool at https://www.molnac.unisa.it/BioTools/consrank/. CONTACT: romina.oliva@uniparthenope.it.
SUMMARY: Herein, we present CONSRANK, a web tool for analyzing, comparing and ranking protein-protein and protein-nucleic acid docking models, based on the conservation of inter-residue contacts and its visualization in 2D and 3D interactive contact maps. AVAILABILITY AND IMPLEMENTATION: CONSRANK is accessible as a public web tool at https://www.molnac.unisa.it/BioTools/consrank/. CONTACT: romina.oliva@uniparthenope.it.
Authors: Marc F Lensink; Guillaume Brysbaert; Nurul Nadzirin; Sameer Velankar; Raphaël A G Chaleil; Tereza Gerguri; Paul A Bates; Elodie Laine; Alessandra Carbone; Sergei Grudinin; Ren Kong; Ran-Ran Liu; Xi-Ming Xu; Hang Shi; Shan Chang; Miriam Eisenstein; Agnieszka Karczynska; Cezary Czaplewski; Emilia Lubecka; Agnieszka Lipska; Paweł Krupa; Magdalena Mozolewska; Łukasz Golon; Sergey Samsonov; Adam Liwo; Silvia Crivelli; Guillaume Pagès; Mikhail Karasikov; Maria Kadukova; Yumeng Yan; Sheng-You Huang; Mireia Rosell; Luis A Rodríguez-Lumbreras; Miguel Romero-Durana; Lucía Díaz-Bueno; Juan Fernandez-Recio; Charles Christoffer; Genki Terashi; Woong-Hee Shin; Tunde Aderinwale; Sai Raghavendra Maddhuri Venkata Subraman; Daisuke Kihara; Dima Kozakov; Sandor Vajda; Kathryn Porter; Dzmitry Padhorny; Israel Desta; Dmitri Beglov; Mikhail Ignatov; Sergey Kotelnikov; Iain H Moal; David W Ritchie; Isaure Chauvot de Beauchêne; Bernard Maigret; Marie-Dominique Devignes; Maria E Ruiz Echartea; Didier Barradas-Bautista; Zhen Cao; Luigi Cavallo; Romina Oliva; Yue Cao; Yang Shen; Minkyung Baek; Taeyong Park; Hyeonuk Woo; Chaok Seok; Merav Braitbard; Lirane Bitton; Dina Scheidman-Duhovny; Justas Dapkūnas; Kliment Olechnovič; Česlovas Venclovas; Petras J Kundrotas; Saveliy Belkin; Devlina Chakravarty; Varsha D Badal; Ilya A Vakser; Thom Vreven; Sweta Vangaveti; Tyler Borrman; Zhiping Weng; Johnathan D Guest; Ragul Gowthaman; Brian G Pierce; Xianjin Xu; Rui Duan; Liming Qiu; Jie Hou; Benjamin Ryan Merideth; Zhiwei Ma; Jianlin Cheng; Xiaoqin Zou; Panagiotis I Koukos; Jorge Roel-Touris; Francesco Ambrosetti; Cunliang Geng; Jörg Schaarschmidt; Mikael E Trellet; Adrien S J Melquiond; Li Xue; Brian Jiménez-García; Charlotte W van Noort; Rodrigo V Honorato; Alexandre M J J Bonvin; Shoshana J Wodak Journal: Proteins Date: 2019-10-25
Authors: Edrisse Chermak; Renato De Donato; Marc F Lensink; Andrea Petta; Luigi Serra; Vittorio Scarano; Luigi Cavallo; Romina Oliva Journal: PLoS One Date: 2016-11-15 Impact factor: 3.240