Literature DB >> 25531248

DNA cytosine methylation and hydroxymethylation at the borders.

Melanie Ehrlich1, Kenneth C Ehrlich.   

Abstract

Entities:  

Keywords:  5-hydroxymethylcytosine; 5-methylcytosine; RNA splicing; chromatin; enhancers; promoters

Mesh：

Substances：

Year:  2014        PMID： 25531248      PMCID： PMC4321890          DOI： 10.2217/epi.14.48

Source DB:  PubMed          Journal:  Epigenomics        ISSN： 1750-192X            Impact factor:   4.778


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  30 in total

1.  Unusual properties of the DNA from Xanthomonas phage XP-12 in which 5-methylcytosine completely replaces cytosine.

Authors:  M Ehrlich; K Ehrlich; J A Mayo
Journal:  Biochim Biophys Acta       Date:  1975-06-16

2.  A new pyrimidine base from bacteriophage nucleic acids.

Authors:  G R WYATT; S S COHEN
Journal:  Nature       Date:  1952-12-20       Impact factor: 49.962

3.  Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.

Authors:  Miao Yu; Gary C Hon; Keith E Szulwach; Chun-Xiao Song; Liang Zhang; Audrey Kim; Xuekun Li; Qing Dai; Yin Shen; Beomseok Park; Jung-Hyun Min; Peng Jin; Bing Ren; Chuan He
Journal:  Cell       Date:  2012-05-17       Impact factor: 41.582

4.  Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine.

Authors:  Chun-Xiao Song; Keith E Szulwach; Ye Fu; Qing Dai; Chengqi Yi; Xuekun Li; Yujing Li; Chih-Hsin Chen; Wen Zhang; Xing Jian; Jing Wang; Li Zhang; Timothy J Looney; Baichen Zhang; Lucy A Godley; Leslie M Hicks; Bruce T Lahn; Peng Jin; Chuan He
Journal:  Nat Biotechnol       Date:  2010-12-12       Impact factor: 54.908

5.  Distinct roles of the methylcytosine oxidases Tet1 and Tet2 in mouse embryonic stem cells.

Authors:  Yun Huang; Lukas Chavez; Xing Chang; Xue Wang; William A Pastor; Jinsuk Kang; Jorge A Zepeda-Martínez; Utz J Pape; Steven E Jacobsen; Bjoern Peters; Anjana Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-13       Impact factor: 11.205

6.  Hydroxylation of 5-methylcytosine by TET2 maintains the active state of the mammalian HOXA cluster.

Authors:  Michael T Bocker; Francesca Tuorto; Günter Raddatz; Tanja Musch; Feng-Chun Yang; Mingjiang Xu; Frank Lyko; Achim Breiling
Journal:  Nat Commun       Date:  2012-05-08       Impact factor: 14.919

7.  Dnmt3a-dependent nonpromoter DNA methylation facilitates transcription of neurogenic genes.

Authors:  Hao Wu; Volkan Coskun; Jifang Tao; Wei Xie; Weihong Ge; Kazuaki Yoshikawa; En Li; Yi Zhang; Yi Eve Sun
Journal:  Science       Date:  2010-07-23       Impact factor: 47.728

8.  Global epigenomic reconfiguration during mammalian brain development.

Authors:  Ryan Lister; Eran A Mukamel; Joseph R Nery; Mark Urich; Clare A Puddifoot; Nicholas D Johnson; Jacinta Lucero; Yun Huang; Andrew J Dwork; Matthew D Schultz; Miao Yu; Julian Tonti-Filippini; Holger Heyn; Shijun Hu; Joseph C Wu; Anjana Rao; Manel Esteller; Chuan He; Fatemeh G Haghighi; Terrence J Sejnowski; M Margarita Behrens; Joseph R Ecker
Journal:  Science       Date:  2013-07-04       Impact factor: 47.728

9.  Dynamic hydroxymethylation of deoxyribonucleic acid marks differentiation-associated enhancers.

Authors:  Aurélien A Sérandour; Stéphane Avner; Frédérik Oger; Maud Bizot; Frédéric Percevault; Céline Lucchetti-Miganeh; Gaëlle Palierne; Céline Gheeraert; Frédérique Barloy-Hubler; Christine Le Péron; Thierry Madigou; Emmanuelle Durand; Philippe Froguel; Bart Staels; Philippe Lefebvre; Raphaël Métivier; Jérôme Eeckhoute; Gilles Salbert
Journal:  Nucleic Acids Res       Date:  2012-06-22       Impact factor: 16.971

10.  TET1 is a maintenance DNA demethylase that prevents methylation spreading in differentiated cells.

Authors:  Chunlei Jin; Yue Lu; Jaroslav Jelinek; Shoudan Liang; Marcos R H Estecio; Michelle Craig Barton; Jean-Pierre J Issa
Journal:  Nucleic Acids Res       Date:  2014-05-29       Impact factor: 16.971
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  22 in total

Review 1.  DNA Methylation in Radiation-Induced Carcinogenesis: Experimental Evidence and Clinical Perspectives.

Authors:  Isabelle R Miousse; Laura E Ewing; Kristy R Kutanzi; Robert J Griffin; Igor Koturbash
Journal:  Crit Rev Oncog       Date:  2018

Review 2.  DNA methylation in systemic lupus erythematosus.

Authors:  Christian M Hedrich; Katrin Mäbert; Thomas Rauen; George C Tsokos
Journal:  Epigenomics       Date:  2016-11-25       Impact factor: 4.778

Review 3.  Effects of ionizing radiation on DNA methylation: from experimental biology to clinical applications.

Authors:  Isabelle R Miousse; Kristy R Kutanzi; Igor Koturbash
Journal:  Int J Radiat Biol       Date:  2017-02-21       Impact factor: 2.694

4.  X-ray irradiation induces subtle changes in the genome-wide distribution of DNA hydroxymethylation with opposing trends in genic and intergenic regions.

Authors:  Benjamin V Becker; Leonhard Kaatsch; Richard Obermair; Gerrit Schrock; Matthias Port; Reinhard Ullmann
Journal:  Epigenetics       Date:  2019-01-29       Impact factor: 4.528

Review 5.  Integration of Epigenetic Mechanisms into Non-Genotoxic Carcinogenicity Hazard Assessment: Focus on DNA Methylation and Histone Modifications.

Authors:  Daniel Desaulniers; Paule Vasseur; Abigail Jacobs; M Cecilia Aguila; Norman Ertych; Miriam N Jacobs
Journal:  Int J Mol Sci       Date:  2021-10-11       Impact factor: 5.923

6.  Age-related epigenome-wide DNA methylation and hydroxymethylation in longitudinal mouse blood.

Authors:  Joseph Kochmanski; Elizabeth H Marchlewicz; Raymond G Cavalcante; Maureen A Sartor; Dana C Dolinoy
Journal:  Epigenetics       Date:  2018-08-23       Impact factor: 4.528

7.  2017 Michael Fry Award Lecture When DNA is Actually Not a Target: Radiation Epigenetics as a Tool to Understand and Control Cellular Response to Ionizing Radiation.

Authors:  Igor Koturbash
Journal:  Radiat Res       Date:  2018-04-26       Impact factor: 2.841

8.  Exploring DNA methylation changes in promoter, intragenic, and intergenic regions as early and late events in breast cancer formation.

Authors:  Garth H Rauscher; Jacob K Kresovich; Matthew Poulin; Liying Yan; Virgilia Macias; Abeer M Mahmoud; Umaima Al-Alem; Andre Kajdacsy-Balla; Elizabeth L Wiley; Debra Tonetti; Melanie Ehrlich
Journal:  BMC Cancer       Date:  2015-10-29       Impact factor: 4.430

9.  Redirected nuclear glutamate dehydrogenase supplies Tet3 with α-ketoglutarate in neurons.

Authors:  Franziska R Traube; Dilara Özdemir; Hanife Sahin; Constanze Scheel; Andrea F Glück; Anna S Geserich; Sabine Oganesian; Sarantos Kostidis; Katharina Iwan; René Rahimoff; Grazia Giorgio; Markus Müller; Fabio Spada; Martin Biel; Jürgen Cox; Martin Giera; Stylianos Michalakis; Thomas Carell
Journal:  Nat Commun       Date:  2021-07-02       Impact factor: 14.919

10.  Tet1 and Tet2 Protect DNA Methylation Canyons against Hypermethylation.

Authors:  Laura Wiehle; Günter Raddatz; Tanja Musch; Meelad M Dawlaty; Rudolf Jaenisch; Frank Lyko; Achim Breiling
Journal:  Mol Cell Biol       Date:  2015-11-23       Impact factor: 5.069
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