Literature DB >> 25530082

Recombinant renewable polyclonal antibodies.

Fortunato Ferrara1, Sara D'Angelo, Tiziano Gaiotto, Leslie Naranjo, Hongzhao Tian, Susanne Gräslund, Elena Dobrovetsky, Peter Hraber, Fridtjof Lund-Johansen, Silvia Saragozza, Daniele Sblattero, Csaba Kiss, Andrew R M Bradbury.   

Abstract

Only a small fraction of the antibodies in a traditional polyclonal antibody mixture recognize the target of interest, frequently resulting in undesirable polyreactivity. Here, we show that high-quality recombinant polyclonals, in which hundreds of different antibodies are all directed toward a target of interest, can be easily generated in vitro by combining phage and yeast display. We show that, unlike traditional polyclonals, which are limited resources, recombinant polyclonal antibodies can be amplified over one hundred million-fold without losing representation or functionality. Our protocol was tested on 9 different targets to demonstrate how the strategy allows the selective amplification of antibodies directed toward desirable target specific epitopes, such as those found in one protein but not a closely related one, and the elimination of antibodies recognizing common epitopes, without significant loss of diversity. These recombinant renewable polyclonal antibodies are usable in different assays, and can be generated in high throughput. This approach could potentially be used to develop highly specific recombinant renewable antibodies against all human gene products.

Entities:  

Keywords:  CTBP, C-terminal binding protein; ELISA, enzyme linked immunosorbant assay; HCDR3, Heavy chain complementarity determining region 3; HPA, Human Protein Atlas; scFv, single chain Fv; PrESTs, Protein epitope signature tag; rrpAbs, recombinant renewable poly; antibody validation; phage display; polyclonal recombinant antibodies; yeast display

Mesh:

Substances:

Year:  2015        PMID: 25530082      PMCID: PMC4622072          DOI: 10.4161/19420862.2015.989047

Source DB:  PubMed          Journal:  MAbs        ISSN: 1942-0862            Impact factor:   5.857


  40 in total

Review 1.  Recombinant polyclonal antibody libraries.

Authors:  J Sharon; S Sarantopoulos; W Den; C Y Kao; C M Baecher-Allan; K E Santora; S R Sompuram; S Petersen-Mahrt; B R Williams
Journal:  Comb Chem High Throughput Screen       Date:  2000-06       Impact factor: 1.339

2.  Antibody arrays for high-throughput screening of antibody-antigen interactions.

Authors:  R M de Wildt; C R Mundy; B D Gorick; I M Tomlinson
Journal:  Nat Biotechnol       Date:  2000-09       Impact factor: 54.908

3.  Multiplexed immuno-precipitation with 1725 commercially available antibodies to cellular proteins.

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Journal:  Proteomics       Date:  2011-11-07       Impact factor: 3.984

4.  New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.

Authors:  Stéphane Guindon; Jean-François Dufayard; Vincent Lefort; Maria Anisimova; Wim Hordijk; Olivier Gascuel
Journal:  Syst Biol       Date:  2010-03-29       Impact factor: 15.683

5.  Two-state selection of conformation-specific antibodies.

Authors:  Junjun Gao; Sachdev S Sidhu; James A Wells
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-10       Impact factor: 11.205

6.  Isolation of picomolar affinity anti-c-erbB-2 single-chain Fv by molecular evolution of the complementarity determining regions in the center of the antibody binding site.

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Journal:  J Mol Biol       Date:  1996-11-08       Impact factor: 5.469

7.  Towards a human proteome atlas: high-throughput generation of mono-specific antibodies for tissue profiling.

Authors:  Peter Nilsson; Linda Paavilainen; Karin Larsson; Jenny Odling; Mårten Sundberg; Ann-Catrin Andersson; Caroline Kampf; Anja Persson; Cristina Al-Khalili Szigyarto; Jenny Ottosson; Erik Björling; Sophia Hober; Henrik Wernérus; Kenneth Wester; Fredrik Pontén; Mathias Uhlen
Journal:  Proteomics       Date:  2005-11       Impact factor: 3.984

8.  A method for linking VL and VH region genes that allows bulk transfer between vectors for use in generating polyclonal IgG libraries.

Authors:  S Sarantopoulos; C Y Kao; W Den; J Sharon
Journal:  J Immunol       Date:  1994-06-01       Impact factor: 5.422

9.  GENCODE: the reference human genome annotation for The ENCODE Project.

Authors:  Jennifer Harrow; Adam Frankish; Jose M Gonzalez; Electra Tapanari; Mark Diekhans; Felix Kokocinski; Bronwen L Aken; Daniel Barrell; Amonida Zadissa; Stephen Searle; If Barnes; Alexandra Bignell; Veronika Boychenko; Toby Hunt; Mike Kay; Gaurab Mukherjee; Jeena Rajan; Gloria Despacio-Reyes; Gary Saunders; Charles Steward; Rachel Harte; Michael Lin; Cédric Howald; Andrea Tanzer; Thomas Derrien; Jacqueline Chrast; Nathalie Walters; Suganthi Balasubramanian; Baikang Pei; Michael Tress; Jose Manuel Rodriguez; Iakes Ezkurdia; Jeltje van Baren; Michael Brent; David Haussler; Manolis Kellis; Alfonso Valencia; Alexandre Reymond; Mark Gerstein; Roderic Guigó; Tim J Hubbard
Journal:  Genome Res       Date:  2012-09       Impact factor: 9.043

10.  neXtProt: a knowledge platform for human proteins.

Authors:  Lydie Lane; Ghislaine Argoud-Puy; Aurore Britan; Isabelle Cusin; Paula D Duek; Olivier Evalet; Alain Gateau; Pascale Gaudet; Anne Gleizes; Alexandre Masselot; Catherine Zwahlen; Amos Bairoch
Journal:  Nucleic Acids Res       Date:  2011-12-01       Impact factor: 16.971

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  20 in total

1.  A switchable yeast display/secretion system.

Authors:  James A Van Deventer; Ryan L Kelly; Saravanan Rajan; K Dane Wittrup; Sachdev S Sidhu
Journal:  Protein Eng Des Sel       Date:  2015-09-01       Impact factor: 1.650

2.  Selection of phage-displayed accessible recombinant targeted antibodies (SPARTA): methodology and applications.

Authors:  Sara D'Angelo; Fernanda I Staquicini; Fortunato Ferrara; Daniela I Staquicini; Geetanjali Sharma; Christy A Tarleton; Huynh Nguyen; Leslie A Naranjo; Richard L Sidman; Wadih Arap; Andrew Rm Bradbury; Renata Pasqualini
Journal:  JCI Insight       Date:  2018-05-03

3.  pMINERVA: A donor-acceptor system for the in vivo recombineering of scFv into IgG molecules.

Authors:  M Batonick; M M Kiss; E P Fuller; C M Magadan; E G Holland; Q Zhao; D Wang; B K Kay; M P Weiner
Journal:  J Immunol Methods       Date:  2016-02-03       Impact factor: 2.303

4.  Epitope mapping of commercial antibodies that detect myocilin.

Authors:  Athéna C Patterson-Orazem; Shannon E Hill; Michael P Fautsch; Raquel L Lieberman
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Review 5.  Ligand-targeted theranostic nanomedicines against cancer.

Authors:  Virginia J Yao; Sara D'Angelo; Kimberly S Butler; Christophe Theron; Tracey L Smith; Serena Marchiò; Juri G Gelovani; Richard L Sidman; Andrey S Dobroff; C Jeffrey Brinker; Andrew R M Bradbury; Wadih Arap; Renata Pasqualini
Journal:  J Control Release       Date:  2016-01-06       Impact factor: 9.776

Review 6.  Deep sequencing in library selection projects: what insight does it bring?

Authors:  J Glanville; S D'Angelo; T A Khan; S T Reddy; L Naranjo; F Ferrara; A R M Bradbury
Journal:  Curr Opin Struct Biol       Date:  2015-08       Impact factor: 6.809

7.  A single donor is sufficient to produce a highly functional in vitro antibody library.

Authors:  M Frank Erasmus; Sara D'Angelo; Fortunato Ferrara; Leslie Naranjo; André A Teixeira; Rebecca Buonpane; Shaun M Stewart; Horacio G Nastri; Andrew R M Bradbury
Journal:  Commun Biol       Date:  2021-03-19

8.  Streamlining the Pipeline for Generation of Recombinant Affinity Reagents by Integrating the Affinity Maturation Step.

Authors:  Renhua Huang; Kevin T Gorman; Chris R Vinci; Elena Dobrovetsky; Susanne Gräslund; Brian K Kay
Journal:  Int J Mol Sci       Date:  2015-09-30       Impact factor: 5.923

9.  Western Blotting Inaccuracies with Unverified Antibodies: Need for a Western Blotting Minimal Reporting Standard (WBMRS).

Authors:  Jennifer E Gilda; Rajeshwary Ghosh; Jenice X Cheah; Toni M West; Sue C Bodine; Aldrin V Gomes
Journal:  PLoS One       Date:  2015-08-19       Impact factor: 3.240

10.  Highly multiplexed and quantitative cell-surface protein profiling using genetically barcoded antibodies.

Authors:  Samuel B Pollock; Amy Hu; Yun Mou; Alexander J Martinko; Olivier Julien; Michael Hornsby; Lynda Ploder; Jarrett J Adams; Huimin Geng; Markus Müschen; Sachdev S Sidhu; Jason Moffat; James A Wells
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-23       Impact factor: 12.779

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