Literature DB >> 25529256

Marker-free automated histopathological annotation of lung tumour subtypes by FTIR imaging.

Frederik Großerueschkamp1, Angela Kallenbach-Thieltges, Thomas Behrens, Thomas Brüning, Matthias Altmayer, Georgios Stamatis, Dirk Theegarten, Klaus Gerwert.   

Abstract

By integration of FTIR imaging and a novel trained random forest classifier, lung tumour classes and subtypes of adenocarcinoma are identified in fresh-frozen tissue slides automated and marker-free. The tissue slices are collected under standard operation procedures within our consortium and characterized by current gold standards in histopathology. In addition, meta data of the patients are taken. The improved standards on sample collection and characterization results in higher accuracy and reproducibility as compared to former studies and allows here for the first time the identification of adenocarcinoma subtypes by this approach. The differentiation of subtypes is especially important for prognosis and therapeutic decision.

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Year:  2015        PMID: 25529256     DOI: 10.1039/c4an01978d

Source DB:  PubMed          Journal:  Analyst        ISSN: 0003-2654            Impact factor:   4.616


  23 in total

1.  Selecting optimal features from Fourier transform infrared spectroscopy for discrete-frequency imaging.

Authors:  Rupali Mankar; Michael J Walsh; Rohit Bhargava; Saurabh Prasad; David Mayerich
Journal:  Analyst       Date:  2018-02-26       Impact factor: 4.616

2.  SIproc: an open-source biomedical data processing platform for large hyperspectral images.

Authors:  Sebastian Berisha; Shengyuan Chang; Sam Saki; Davar Daeinejad; Ziqi He; Rupali Mankar; David Mayerich
Journal:  Analyst       Date:  2017-04-10       Impact factor: 4.616

Review 3.  [Pathology of lung cancer].

Authors:  D Theegarten; T Hager
Journal:  Radiologe       Date:  2016-09       Impact factor: 0.635

Review 4.  Infrared Spectroscopic Imaging Advances as an Analytical Technology for Biomedical Sciences.

Authors:  Tomasz P Wrobel; Rohit Bhargava
Journal:  Anal Chem       Date:  2018-02-06       Impact factor: 6.986

5.  Application of Label-Free Proteomics for Quantitative Analysis of Urothelial Carcinoma and Cystitis Tissue.

Authors:  Kathrin E Witzke; Frederik Großerueschkamp; Klaus Gerwert; Barbara Sitek
Journal:  Methods Mol Biol       Date:  2021

Review 6.  Advances in Digital Pathology: From Artificial Intelligence to Label-Free Imaging.

Authors:  Frederik Großerueschkamp; Hendrik Jütte; Klaus Gerwert; Andrea Tannapfel
Journal:  Visc Med       Date:  2021-08-24

7.  Roadmap on optical sensors.

Authors:  Mário F S Ferreira; Enrique Castro-Camus; David J Ottaway; José Miguel López-Higuera; Xian Feng; Wei Jin; Yoonchan Jeong; Nathalie Picqué; Limin Tong; Björn M Reinhard; Paul M Pellegrino; Alexis Méndez; Max Diem; Frank Vollmer; Qimin Quan
Journal:  J Opt       Date:  2017-07-24       Impact factor: 2.516

Review 8.  Emerging Themes in Image Informatics and Molecular Analysis for Digital Pathology.

Authors:  Rohit Bhargava; Anant Madabhushi
Journal:  Annu Rev Biomed Eng       Date:  2016-07-11       Impact factor: 9.590

9.  Automated Osteosclerosis Grading of Clinical Biopsies Using Infrared Spectroscopic Imaging.

Authors:  Rupali Mankar; Carlos E Bueso-Ramos; C Cameron Yin; Juliana Elisa Hidalgo-Lopez; Sebastian Berisha; Mustafa Kansiz; David Mayerich
Journal:  Anal Chem       Date:  2019-12-13       Impact factor: 6.986

10.  Resolving Interobserver Discrepancies in Lung Cancer Diagnoses by Spectral Histopathology.

Authors:  Ali Akalin; Ayşegül Ergin; Stanley Remiszewski; Xinying Mu; Dan Raz; Max Diem
Journal:  Arch Pathol Lab Med       Date:  2018-08-24       Impact factor: 5.534

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