Literature DB >> 25525552

Automated Cell Detection and Morphometry on Growth Plate Images of Mouse Bone.

Maria-Grazia Ascenzi1, Xia Du1, James I Harding1, Emily N Beylerian2, Brian M de Silva2, Ben J Gross2, Hannah K Kastein2, Weiguang Wang1, Karen M Lyons1, Hayden Schaeffer3.   

Abstract

Microscopy imaging of mouse growth plates is extensively used in biology to understand the effect of specific molecules on various stages of normal bone development and on bone disease. Until now, such image analysis has been conducted by manual detection. In fact, when existing automated detection techniques were applied, morphological variations across the growth plate and heterogeneity of image background color, including the faint presence of cells (chondrocytes) located deeper in tissue away from the image's plane of focus, and lack of cell-specific features, interfered with identification of cell. We propose the first method of automated detection and morphometry applicable to images of cells in the growth plate of long bone. Through ad hoc sequential application of the Retinex method, anisotropic diffusion and thresholding, our new cell detection algorithm (CDA) addresses these challenges on bright-field microscopy images of mouse growth plates. Five parameters, chosen by the user in respect of image characteristics, regulate our CDA. Our results demonstrate effectiveness of the proposed numerical method relative to manual methods. Our CDA confirms previously established results regarding chondrocytes' number, area, orientation, height and shape of normal growth plates. Our CDA also confirms differences previously found between the genetic mutated mouse Smad1/5CKO and its control mouse on fluorescence images. The CDA aims to aid biomedical research by increasing efficiency and consistency of data collection regarding arrangement and characteristics of chondrocytes. Our results suggest that automated extraction of data from microscopy imaging of growth plates can assist in unlocking information on normal and pathological development, key to the underlying biological mechanisms of bone growth.

Entities:  

Keywords:  Anisotropic diffusion; Retinex; cell detection; growth plate; mouse

Year:  2014        PMID: 25525552      PMCID: PMC4267696          DOI: 10.4236/am.2014.518273

Source DB:  PubMed          Journal:  Appl Math (Irvine)        ISSN: 2152-7385


  19 in total

1.  A PDE formalization of Retinex theory.

Authors:  Jean Michel Morel; Ana Belén Petro; Catalina Sbert
Journal:  IEEE Trans Image Process       Date:  2010-05-03       Impact factor: 10.856

Review 2.  Fate of the hypertrophic chondrocyte: microenvironmental perspectives on apoptosis and survival in the epiphyseal growth plate.

Authors:  Irving M Shapiro; Christopher S Adams; Theresa Freeman; Vickram Srinivas
Journal:  Birth Defects Res C Embryo Today       Date:  2005-12

3.  Analysis of the orientation of primary cilia in growth plate cartilage: a mathematical method based on multiphoton microscopical images.

Authors:  Maria-Grazia Ascenzi; Michelle Lenox; Cornelia Farnum
Journal:  J Struct Biol       Date:  2006-11-21       Impact factor: 2.867

4.  Development of the post-natal growth plate requires intraflagellar transport proteins.

Authors:  Buer Song; Courtney J Haycraft; Hwa-seon Seo; Bradley K Yoder; Rosa Serra
Journal:  Dev Biol       Date:  2007-02-12       Impact factor: 3.582

Review 5.  Genetic control of bone formation.

Authors:  Gerard Karsenty; Henry M Kronenberg; Carmine Settembre
Journal:  Annu Rev Cell Dev Biol       Date:  2009       Impact factor: 13.827

6.  Effect of localization, length and orientation of chondrocytic primary cilium on murine growth plate organization.

Authors:  Maria-Grazia Ascenzi; Christian Blanco; Ian Drayer; Hannah Kim; Ryan Wilson; Kelsey N Retting; Karen M Lyons; George Mohler
Journal:  J Theor Biol       Date:  2011-06-23       Impact factor: 2.691

7.  NIH Image to ImageJ: 25 years of image analysis.

Authors:  Caroline A Schneider; Wayne S Rasband; Kevin W Eliceiri
Journal:  Nat Methods       Date:  2012-07       Impact factor: 28.547

8.  Efficacy of ImageJ in the assessment of apoptosis.

Authors:  Iman M Helmy; Adel M Abdel Azim
Journal:  Diagn Pathol       Date:  2012-02-06       Impact factor: 2.644

9.  CellProfiler: image analysis software for identifying and quantifying cell phenotypes.

Authors:  Anne E Carpenter; Thouis R Jones; Michael R Lamprecht; Colin Clarke; In Han Kang; Ola Friman; David A Guertin; Joo Han Chang; Robert A Lindquist; Jason Moffat; Polina Golland; David M Sabatini
Journal:  Genome Biol       Date:  2006-10-31       Impact factor: 13.583

10.  An automatic method for robust and fast cell detection in bright field images from high-throughput microscopy.

Authors:  Felix Buggenthin; Carsten Marr; Michael Schwarzfischer; Philipp S Hoppe; Oliver Hilsenbeck; Timm Schroeder; Fabian J Theis
Journal:  BMC Bioinformatics       Date:  2013-10-04       Impact factor: 3.169

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  1 in total

1.  Epithelial-mesenchymal transition and mesenchymal-epithelial transition response during differentiation of growth-plate chondrocytes in endochondral ossification.

Authors:  Shasha Zhou; Yihang Shen; Linlin Wang; Pin Li
Journal:  Int J Clin Exp Med       Date:  2015-08-15
  1 in total

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