Literature DB >> 25515047

Sapocribrum chincoteaguense n. gen. n. sp.: A Small, Scale-bearing Amoebozoan with Flabellinid Affinities.

Daniel J G Lahr1,2, Jessica Grant2, Robert Molestina3, Laura A Katz2, O Roger Anderson4.   

Abstract

The isolate American Type Culture Collection (ATCC)® 50979™ is a small amoebozoan whose actin gene was previously characterized, but did not allow a stable phylogenetic placement. This isolate was originally mis-identified upon deposition, and subsequently mis-illustrated in a recent publication. Here, we provide both a detailed morphological description as well as additional molecular analyses in order to clarify the isolate's phylogenetic relationships. The amoeba is minute (less than 5 μm), and presents the behavior of staying in a fixed location, while emitting one or two thin pseudopods. Transmission electron microscopy reveals that the cell is covered in a layer with embedded scales, giving the cell an armored appearance. Molecular phylogenetic analyses of data (actin, alpha- and beta-tubulin, elongation factor 2, and 14-3-3) from transcriptomes of this and four other isolates reveals that ATCC® 50979(™) is closely related to the recently described Squamamoeba japonica and in a novel, stable clade. Due to the unique nature of the scale covering, as well as other gross morphological characters and the molecular phylogenetic analyses, we formally describe the isolate as Sapocribrum chincoteaguense n. gen. n. sp.
© 2014 The Author(s) Journal of Eukaryotic Microbiology © 2014 International Society of Protistologists.

Entities:  

Keywords:  ATCC PRA-39; Filamoeba; Squamamoeba; Trichosphaerium; phylogenetic analyses; transcriptome; transmission electron microscopy

Mesh:

Substances:

Year:  2015        PMID: 25515047      PMCID: PMC4469638          DOI: 10.1111/jeu.12199

Source DB:  PubMed          Journal:  J Eukaryot Microbiol        ISSN: 1066-5234            Impact factor:   3.346


  23 in total

1.  Dermamoeba algensis n. sp. (Amoebozoa, Dermamoebidae): an algivorous lobose amoeba with complex cell coat and unusual feeding mode.

Authors:  Alexey V Smirnov; Olga M Bedjagina; Andrew V Goodkov
Journal:  Eur J Protistol       Date:  2011-03-22       Impact factor: 3.020

2.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

3.  SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building.

Authors:  Manolo Gouy; Stéphane Guindon; Olivier Gascuel
Journal:  Mol Biol Evol       Date:  2009-10-23       Impact factor: 16.240

4.  Squamamoeba japonica n. g. n. sp. (Amoebozoa): a deep-sea amoeba from the Sea of Japan with a novel cell coat structure.

Authors:  Alexander Kudryavtsev; Jan Pawlowski
Journal:  Protist       Date:  2012-09-08

5.  Multigene phylogenetic reconstruction of the Tubulinea (Amoebozoa) corroborates four of the six major lineages, while additionally revealing that shell composition does not predict phylogeny in the Arcellinida.

Authors:  Daniel J G Lahr; Jessica R Grant; Laura A Katz
Journal:  Protist       Date:  2013-03-13

6.  Neoparamoeba Page, 1987: light and electron microscopic observations on six strains of different origin.

Authors:  I Dyková; A Figueras; Z Peric
Journal:  Dis Aquat Organ       Date:  2000-12-21       Impact factor: 1.802

7.  A revision of the order Pellitida Smirnov et al., 2011 (Amoebozoa, Discosea) based on ultrastructural and molecular evidence, with description of Endostelium crystalliferum n. sp.

Authors:  Alexander Kudryavtsev; Matthew W Brown; Alexander Tice; Frederick W Spiegel; Jan Pawlowski; O Roger Anderson
Journal:  Protist       Date:  2014-02-28

8.  Comprehensive phylogenetic reconstruction of amoebozoa based on concatenated analyses of SSU-rDNA and actin genes.

Authors:  Daniel J G Lahr; Jessica Grant; Truc Nguyen; Jian Hua Lin; Laura A Katz
Journal:  PLoS One       Date:  2011-07-28       Impact factor: 3.240

9.  Korotnevella hemistylolepis n. sp. and Korotnevella monacantholepis n. sp. (Paramoebidae), two new scale-covered mesohaline amoebae.

Authors:  J O'Kelly; M T Peglar; M N Black; T K Sawyer; T A Nerad
Journal:  J Eukaryot Microbiol       Date:  2001 Nov-Dec       Impact factor: 3.346

10.  Building a phylogenomic pipeline for the eukaryotic tree of life - addressing deep phylogenies with genome-scale data.

Authors:  Jessica R Grant; Laura A Katz
Journal:  PLoS Curr       Date:  2014-04-02
View more
  1 in total

1.  Between a Pod and a Hard Test: The Deep Evolution of Amoebae.

Authors:  Seungho Kang; Alexander K Tice; Frederick W Spiegel; Jeffrey D Silberman; Tomáš Pánek; Ivan Cepicka; Martin Kostka; Anush Kosakyan; Daniel M C Alcântara; Andrew J Roger; Lora L Shadwick; Alexey Smirnov; Alexander Kudryavtsev; Daniel J G Lahr; Matthew W Brown
Journal:  Mol Biol Evol       Date:  2017-09-01       Impact factor: 16.240

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.