Literature DB >> 25514172

Accurate data process for nanopore analysis.

Zhen Gu1, Yi-Lun Ying, Chan Cao, Pingang He, Yi-Tao Long.   

Abstract

Data analysis for nanopore experiments remains a fundamental and technological challenge because of the large data volume, the presence of unavoidable noise, and the filtering effect. Here, we present an accurate and robust data process that recognizes the current blockades and enables evaluation of the dwell time and current amplitude through a novel second-order-differential-based calibration method and an integration method, respectively. We applied the developed data process to analyze both generated blockages and experimental data. Compared to the results obtained using the conventional method, those obtained using the new method provided a significant increase in the accuracy of nanopore measurements.

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Year:  2015        PMID: 25514172     DOI: 10.1021/ac5028758

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  10 in total

1.  From current trace to the understanding of confined media.

Authors:  Jean Roman; Bruno Le Pioufle; Loïc Auvray; Juan Pelta; Laurent Bacri
Journal:  Eur Phys J E Soft Matter       Date:  2018-09-03       Impact factor: 1.890

2.  Nano-channel of viral DNA packaging motor as single pore to differentiate peptides with single amino acid difference.

Authors:  Zhouxiang Ji; Xinqi Kang; Shaoying Wang; Peixuan Guo
Journal:  Biomaterials       Date:  2018-08-03       Impact factor: 12.479

3.  MOSAIC: A Modular Single-Molecule Analysis Interface for Decoding Multistate Nanopore Data.

Authors:  Jacob H Forstater; Kyle Briggs; Joseph W F Robertson; Jessica Ettedgui; Olivier Marie-Rose; Canute Vaz; John J Kasianowicz; Vincent Tabard-Cossa; Arvind Balijepalli
Journal:  Anal Chem       Date:  2016-11-15       Impact factor: 6.986

4.  Bioinspired Assemblies and Plasmonic Interfaces for Electrochemical Biosensing.

Authors:  Samuel S Hinman; Quan Cheng
Journal:  J Electroanal Chem (Lausanne)       Date:  2016-05-27       Impact factor: 4.464

5.  Fabrication and practical applications of molybdenum disulfide nanopores.

Authors:  Michael Graf; Martina Lihter; Mukeshchand Thakur; Vasileia Georgiou; Juraj Topolancik; B Robert Ilic; Ke Liu; Jiandong Feng; Yann Astier; Aleksandra Radenovic
Journal:  Nat Protoc       Date:  2019-03-22       Impact factor: 13.491

Review 6.  Nanopore-based analysis of biochemical species.

Authors:  Nannan Liu; Zekun Yang; Xiaowen Ou; Benmei Wei; Juntao Zhang; Yongmei Jia; Fan Xia
Journal:  Mikrochim Acta       Date:  2015-07-25       Impact factor: 5.833

7.  Advanced electroanalytical chemistry at nanoelectrodes.

Authors:  Yi-Lun Ying; Zhifeng Ding; Dongping Zhan; Yi-Tao Long
Journal:  Chem Sci       Date:  2017-02-17       Impact factor: 9.825

8.  Unbiased Data Analysis for the Parameterization of Fast Translocation Events through Nanopores.

Authors:  Florian L R Lucas; Kherim Willems; Matthijs J Tadema; Katarzyna M Tych; Giovanni Maglia; Carsten Wloka
Journal:  ACS Omega       Date:  2022-07-19

9.  Aerolysin nanopore-based identification of proteinogenic amino acids using a bipolar peptide probe.

Authors:  Yaxian Ge; Mengjie Cui; Qiuqi Zhang; Ying Wang; Dongmei Xi
Journal:  Nanoscale Adv       Date:  2022-08-11

10.  A Generalized Transformer-Based Pulse Detection Algorithm.

Authors:  Dario Dematties; Chenyu Wen; Shi-Li Zhang
Journal:  ACS Sens       Date:  2022-08-30       Impact factor: 9.618

  10 in total

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