Literature DB >> 25505646

In silico pharmacology: drug design and discovery's gate to the future.

Hamid R Noori1, Rainer Spanagel1.   

Abstract

Entities:  

Year:  2013        PMID: 25505646      PMCID: PMC4230818          DOI: 10.1186/2193-9616-1-1

Source DB:  PubMed          Journal:  In Silico Pharmacol        ISSN: 2193-9616


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Introduction of new drugs and novel therapeutic solutions is a long and costly process (Myers and Baker 2001; DiMasi et al., 2003). Traditionally, pharmacologists strive to optimize and accelerate this process by developing new in vivo and in vitro investigation strategies. However, the last decades have been witnessing the rise of alternative research models, the so-called in silico approaches, using computational environments as their experimental laboratories. Imitating the common biological terms in vivo and in vitro, the term in silico refers to performing experiments using computers. Although the historical origin of this term is not clear, it is safe to assume that silico is a reference to the chemical element Silicon (Si), a key component of computer chips. The majority of the in silico methods are primarily used in parallel with the generation of in vivo and in vitro data for accurate modeling and validation of a wide range of applications from the ligand design and optimization to the characterization of fundamental pharmacological properties of molecules such as absorption, distribution, metabolism, excretion and toxicity (Ekins et al., 2007). The diversity of the developed mathematical and biophysical models in this field resembles the manifoldness of the pharmacological problems uniquely. While the seminal work of Hansch and Fujita (1964) on the statistical relationships between the molecular structure and a specific chemical or biological property (Quantitative structure-activity relationships) initiated the application of modern data mining and statistical techniques such as the virtual ligand screening (Oprea and Matter, 2004) and the virtual affinity profiling (O'Connor and Roth, 2005; Paolini et al.,2006), biophysical (Jones and Woodhall, 2005; Graupner and Gutkin, 2009) and neurochemical network models (Noori and Jäger, 2010; Noori, 2012; Noori et al., 2012) mainly apply deterministic dynamical systems to identify drug-induced alterations of electrophysiological and/or neurochemical network characteristics. In light of the rapid progress of in silico approaches, it could be expected that biomedical investigations in virtual reality ultimately lead to rigorous changes in the pharmaceutical research landscape by optimizing the drug development process, reducing the number of animal experiments and smoothing the path to personalized medicine. Despite the increasing interest in this field of research, publication platforms with dedicated agenda to in silico pharmacology are missing. With the launch of our journal, we aim to fill this gap and provide a forum for interdisciplinary research articles that specifically address computational approaches in drug-design and multi-scale analysis of bioactive substances from the cellular up to behavioral level.
  11 in total

1.  Drug discovery--an operating model for a new era.

Authors:  S Myers; A Baker
Journal:  Nat Biotechnol       Date:  2001-08       Impact factor: 54.908

2.  The price of innovation: new estimates of drug development costs.

Authors:  Joseph A DiMasi; Ronald W Hansen; Henry G Grabowski
Journal:  J Health Econ       Date:  2003-03       Impact factor: 3.883

Review 3.  Integrating virtual screening in lead discovery.

Authors:  Tudor I Oprea; Hans Matter
Journal:  Curr Opin Chem Biol       Date:  2004-08       Impact factor: 8.822

Review 4.  Background synaptic activity in rat entorhinal cortical neurones: differential control of transmitter release by presynaptic receptors.

Authors:  Roland S G Jones; Gavin L Woodhall
Journal:  J Physiol       Date:  2004-10-21       Impact factor: 5.182

Review 5.  Finding new tricks for old drugs: an efficient route for public-sector drug discovery.

Authors:  Kerry A O'Connor; Bryan L Roth
Journal:  Nat Rev Drug Discov       Date:  2005-12       Impact factor: 84.694

6.  Global mapping of pharmacological space.

Authors:  Gaia V Paolini; Richard H B Shapland; Willem P van Hoorn; Jonathan S Mason; Andrew L Hopkins
Journal:  Nat Biotechnol       Date:  2006-07       Impact factor: 54.908

Review 7.  In silico pharmacology for drug discovery: methods for virtual ligand screening and profiling.

Authors:  S Ekins; J Mestres; B Testa
Journal:  Br J Pharmacol       Date:  2007-06-04       Impact factor: 8.739

8.  The effects of the acute administration of low-dosage ethanol on the phasic neurochemical oscillations of the basal ganglia.

Authors:  H R Noori
Journal:  Math Med Biol       Date:  2011-05-04       Impact factor: 1.854

Review 9.  Neurocircuitry for modeling drug effects.

Authors:  Hamid R Noori; Rainer Spanagel; Anita C Hansson
Journal:  Addict Biol       Date:  2012-09       Impact factor: 4.280

Review 10.  Modeling nicotinic neuromodulation from global functional and network levels to nAChR based mechanisms.

Authors:  Michael Graupner; Boris Gutkin
Journal:  Acta Pharmacol Sin       Date:  2009-06       Impact factor: 6.150

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  4 in total

1.  New regulations for animal research - a chance to shine for in silico approaches.

Authors:  Hamid R Noori; Rainer Spanagel
Journal:  In Silico Pharmacol       Date:  2015-02-10

Review 2.  Combining in vitro and in silico Approaches to Find New Candidate Drugs Targeting the Pathological Proteins Related to the Alzheimer's Disease.

Authors:  Hui Li; Xiaobing Wang; Hongmei Yu; Jing Zhu; Hongtao Jin; Aiping Wang; Zhaogang Yang
Journal:  Curr Neuropharmacol       Date:  2018       Impact factor: 7.363

3.  Exposure-response modeling improves selection of radiation and radiosensitizer combinations.

Authors:  Tim Cardilin; Joachim Almquist; Mats Jirstrand; Astrid Zimmermann; Floriane Lignet; Samer El Bawab; Johan Gabrielsson
Journal:  J Pharmacokinet Pharmacodyn       Date:  2021-10-08       Impact factor: 2.745

4.  Polypharmacology-based approach for screening TCM against coinfection of Mycoplasma gallisepticum and Escherichia coli.

Authors:  Jiaxin Bao; Yuan Wang; Shun Wang; Dong Niu; Ze Wang; Rui Li; Yadan Zheng; Muhammad Ishfaq; Zhiyong Wu; Jichang Li
Journal:  Front Vet Sci       Date:  2022-09-26
  4 in total

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