Literature DB >> 25502457

Bacteriophage exclusion, a new defense system.

Rodolphe Barrangou1, John van der Oost2.   

Abstract

The ability to withstand viral predation is critical for survival of most microbes. Accordingly, a plethora of phage resistance systems has been identified in bacterial genomes (Labrie et al, 2010), including restriction‐modification systems (R‐M) (Tock & Dryden, 2005), abortive infection (Abi) (Chopin et al, 2005), Argonaute‐based interference (Swarts et al, 2014), as well as clustered regularly interspaced short palindromic repeats (CRISPR) and associated protein (Cas) adaptive immune system (CRISPR‐Cas) (Barrangou & Marraffini, 2014; Van der Oost et al, 2014). Predictably, the dark matter of bacterial genomes contains a wealth of genetic gold. A study published in this issue of The EMBO Journal by Goldfarb et al (2015) unveils bacteriophage exclusion (BREX) as a novel, widespread bacteriophage resistance system that provides innate immunity against virulent and temperate phage in bacteria.

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Year:  2014        PMID: 25502457      PMCID: PMC4337066          DOI: 10.15252/embj.201490620

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  10 in total

Review 1.  Bacteriophage resistance mechanisms.

Authors:  Simon J Labrie; Julie E Samson; Sylvain Moineau
Journal:  Nat Rev Microbiol       Date:  2010-03-29       Impact factor: 60.633

Review 2.  CRISPR-Cas systems: Prokaryotes upgrade to adaptive immunity.

Authors:  Rodolphe Barrangou; Luciano A Marraffini
Journal:  Mol Cell       Date:  2014-04-24       Impact factor: 17.970

3.  Defense islands in bacterial and archaeal genomes and prediction of novel defense systems.

Authors:  Kira S Makarova; Yuri I Wolf; Sagi Snir; Eugene V Koonin
Journal:  J Bacteriol       Date:  2011-09-09       Impact factor: 3.490

4.  BREX is a novel phage resistance system widespread in microbial genomes.

Authors:  Tamara Goldfarb; Hila Sberro; Eyal Weinstock; Ofir Cohen; Shany Doron; Yoav Charpak-Amikam; Shaked Afik; Gal Ofir; Rotem Sorek
Journal:  EMBO J       Date:  2014-12-01       Impact factor: 11.598

Review 5.  Unravelling the structural and mechanistic basis of CRISPR-Cas systems.

Authors:  John van der Oost; Edze R Westra; Ryan N Jackson; Blake Wiedenheft
Journal:  Nat Rev Microbiol       Date:  2014-06-09       Impact factor: 60.633

6.  [Genetic characteristics of a new phage resistance trait in Streptomyces coelicolor A3(2)].

Authors:  T A Chinenova; N M Mkrtumian; N D Lomovskaia
Journal:  Genetika       Date:  1982-12

Review 7.  Phage abortive infection in lactococci: variations on a theme.

Authors:  Marie-Christine Chopin; Alain Chopin; Elena Bidnenko
Journal:  Curr Opin Microbiol       Date:  2005-08       Impact factor: 7.934

Review 8.  The evolutionary journey of Argonaute proteins.

Authors:  Daan C Swarts; Kira Makarova; Yanli Wang; Kotaro Nakanishi; René F Ketting; Eugene V Koonin; Dinshaw J Patel; John van der Oost
Journal:  Nat Struct Mol Biol       Date:  2014-09       Impact factor: 15.369

Review 9.  The biology of restriction and anti-restriction.

Authors:  Mark R Tock; David T F Dryden
Journal:  Curr Opin Microbiol       Date:  2005-08       Impact factor: 7.934

10.  Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system.

Authors:  Joe Bondy-Denomy; April Pawluk; Karen L Maxwell; Alan R Davidson
Journal:  Nature       Date:  2012-12-16       Impact factor: 49.962

  10 in total
  10 in total

Review 1.  CRISPR-Cas9 genome engineering: Treating inherited retinal degeneration.

Authors:  Erin R Burnight; Joseph C Giacalone; Jessica A Cooke; Jessica R Thompson; Laura R Bohrer; Kathleen R Chirco; Arlene V Drack; John H Fingert; Kristan S Worthington; Luke A Wiley; Robert F Mullins; Edwin M Stone; Budd A Tucker
Journal:  Prog Retin Eye Res       Date:  2018-03-22       Impact factor: 21.198

Review 2.  Evolutionary Genomics of Defense Systems in Archaea and Bacteria.

Authors:  Eugene V Koonin; Kira S Makarova; Yuri I Wolf
Journal:  Annu Rev Microbiol       Date:  2017-06-28       Impact factor: 15.500

3.  A Smooth-Type, Phage-Resistant Klebsiella pneumoniae Mutant Strain Reveals that OmpC Is Indispensable for Infection by Phage GH-K3.

Authors:  Ruopeng Cai; Mei Wu; Hao Zhang; Yufeng Zhang; Mengjun Cheng; Zhimin Guo; Yalu Ji; Hengyu Xi; Xinwu Wang; Yibing Xue; Changjiang Sun; Xin Feng; Liancheng Lei; Yigang Tong; Xiaoyun Liu; Wenyu Han; Jingmin Gu
Journal:  Appl Environ Microbiol       Date:  2018-10-17       Impact factor: 4.792

4.  Phage anti-CBASS and anti-Pycsar nucleases subvert bacterial immunity.

Authors:  Samuel J Hobbs; Tanita Wein; Allen Lu; Benjamin R Morehouse; Julia Schnabel; Azita Leavitt; Erez Yirmiya; Rotem Sorek; Philip J Kranzusch
Journal:  Nature       Date:  2022-04-08       Impact factor: 69.504

Review 5.  Enhancing Whole Phage Therapy and Their Derived Antimicrobial Enzymes through Complex Formulation.

Authors:  Callum J Cooper; Shazeeda Koonjan; Anders S Nilsson
Journal:  Pharmaceuticals (Basel)       Date:  2018-04-19

Review 6.  Determinants of Phage Host Range in Staphylococcus Species.

Authors:  Abraham G Moller; Jodi A Lindsay; Timothy D Read
Journal:  Appl Environ Microbiol       Date:  2019-05-16       Impact factor: 4.792

7.  Selection of Bacteriophages to Control In Vitro 24 h Old Biofilm of Pseudomonas Aeruginosa Isolated from Drinking and Thermal Water.

Authors:  Vanessa Magin; Nathalie Garrec; Yves Andrés
Journal:  Viruses       Date:  2019-08-13       Impact factor: 5.048

8.  The genetic basis of phage susceptibility, cross-resistance and host-range in Salmonella.

Authors:  Benjamin A Adler; Alexey E Kazakov; Crystal Zhong; Hualan Liu; Elizabeth Kutter; Lauren M Lui; Torben N Nielsen; Heloise Carion; Adam M Deutschbauer; Vivek K Mutalik; Adam P Arkin
Journal:  Microbiology (Reading)       Date:  2021-12       Impact factor: 2.777

9.  Potential Role of Accessory Domains in Polyproteins Encoded by Retrotransposons in Anti-viral Defense of Host Cells.

Authors:  Sergey Y Morozov; Alexander A Lezzhov; Ekaterina A Lazareva; Tatiana N Erokhina; Andrey G Solovyev
Journal:  Front Microbiol       Date:  2019-01-04       Impact factor: 5.640

10.  Intra-species variation within Lactobacillus rhamnosus correlates to beneficial or harmful outcomes: lessons from the oral cavity.

Authors:  Mangala A Nadkarni; Nandan P Deshpande; Marc R Wilkins; Neil Hunter
Journal:  BMC Genomics       Date:  2020-09-24       Impact factor: 3.969

  10 in total

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