Literature DB >> 25500524

The demographic determinants of human microbiome health.

Sylvie Estrela1, Marvin Whiteley2, Sam P Brown3.   

Abstract

The human microbiome is a vast reservoir of microbial diversity and increasingly recognized to have a fundamental role in human health. In polymicrobial communities, the presence of one species can modulate the demography (i.e., growth and distribution) of other species. These demographic impacts generate feedbacks in multispecies interactions, which can be magnified in spatially structured populations (e.g., host-associated communities). Here, we argue that demographic feedbacks between species are central to microbiome development, shaping whether and how potential metabolic interactions come to be realized between expanding lineages of bacteria. Understanding how demographic feedbacks tune metabolic interactions and in turn shape microbiome structure and function is now a key challenge to our abilities to better manage microbiome health.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  demography; metabolic interactions; microbiome; multispecies communities; spatial organization

Mesh:

Year:  2014        PMID: 25500524      PMCID: PMC4363132          DOI: 10.1016/j.tim.2014.11.005

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  69 in total

1.  Evolution of species interactions in a biofilm community.

Authors:  Susse Kirkelund Hansen; Paul B Rainey; Janus A J Haagensen; Søren Molin
Journal:  Nature       Date:  2007-02-01       Impact factor: 49.962

2.  Real-time mapping of a hydrogen peroxide concentration profile across a polymicrobial bacterial biofilm using scanning electrochemical microscopy.

Authors:  Xiuhui Liu; Matthew M Ramsey; Xiaole Chen; Dipankar Koley; Marvin Whiteley; Allen J Bard
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-31       Impact factor: 11.205

3.  Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics.

Authors:  Annelie Pernthaler; Anne E Dekas; C Titus Brown; Shana K Goffredi; Tsegereda Embaye; Victoria J Orphan
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-08       Impact factor: 11.205

4.  iDynoMiCS: next-generation individual-based modelling of biofilms.

Authors:  Laurent A Lardon; Brian V Merkey; Sónia Martins; Andreas Dötsch; Cristian Picioreanu; Jan-Ulrich Kreft; Barth F Smets
Journal:  Environ Microbiol       Date:  2011-03-16       Impact factor: 5.491

5.  Bacterial community assembly based on functional genes rather than species.

Authors:  Catherine Burke; Peter Steinberg; Doug Rusch; Staffan Kjelleberg; Torsten Thomas
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-08       Impact factor: 11.205

6.  Social evolution in multispecies biofilms.

Authors:  Sara Mitri; João B Xavier; Kevin R Foster
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-20       Impact factor: 11.205

7.  Selective increases of bifidobacteria in gut microflora improve high-fat-diet-induced diabetes in mice through a mechanism associated with endotoxaemia.

Authors:  P D Cani; A M Neyrinck; F Fava; C Knauf; R G Burcelin; K M Tuohy; G R Gibson; N M Delzenne
Journal:  Diabetologia       Date:  2007-09-06       Impact factor: 10.122

8.  Metabolite cross-feeding enhances virulence in a model polymicrobial infection.

Authors:  Matthew M Ramsey; Kendra P Rumbaugh; Marvin Whiteley
Journal:  PLoS Pathog       Date:  2011-03-31       Impact factor: 6.823

9.  Metabolic modeling of a mutualistic microbial community.

Authors:  Sergey Stolyar; Steve Van Dien; Kristina Linnea Hillesland; Nicolas Pinel; Thomas J Lie; John A Leigh; David A Stahl
Journal:  Mol Syst Biol       Date:  2007-03-13       Impact factor: 11.429

10.  Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota.

Authors:  Richard R Stein; Vanni Bucci; Nora C Toussaint; Charlie G Buffie; Gunnar Rätsch; Eric G Pamer; Chris Sander; João B Xavier
Journal:  PLoS Comput Biol       Date:  2013-12-12       Impact factor: 4.475

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  8 in total

Review 1.  Bacterial Pathogens and the Microbiome.

Authors:  Thad W Vickery; Vijay R Ramakrishnan
Journal:  Otolaryngol Clin North Am       Date:  2017-02       Impact factor: 3.346

2.  Microbiome-pathogen interactions drive epidemiological dynamics of antibiotic resistance: A modeling study applied to nosocomial pathogen control.

Authors:  Laura Temime; Lulla Opatowski; David Rm Smith
Journal:  Elife       Date:  2021-09-14       Impact factor: 8.140

Review 3.  Building the microbiome in health and disease: niche construction and social conflict in bacteria.

Authors:  Luke McNally; Sam P Brown
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-08-19       Impact factor: 6.237

Review 4.  Does Whole Grain Consumption Alter Gut Microbiota and Satiety?

Authors:  Danielle N Cooper; Roy J Martin; Nancy L Keim
Journal:  Healthcare (Basel)       Date:  2015-05-29

5.  Community interactions and spatial structure shape selection on antibiotic resistant lineages.

Authors:  Sylvie Estrela; Sam P Brown
Journal:  PLoS Comput Biol       Date:  2018-06-21       Impact factor: 4.475

6.  The evolution of cooperation within the gut microbiota.

Authors:  Seth Rakoff-Nahoum; Kevin R Foster; Laurie E Comstock
Journal:  Nature       Date:  2016-04-25       Impact factor: 49.962

Review 7.  Challenges in microbial ecology: building predictive understanding of community function and dynamics.

Authors:  Stefanie Widder; Rosalind J Allen; Thomas Pfeiffer; Thomas P Curtis; Carsten Wiuf; William T Sloan; Otto X Cordero; Sam P Brown; Babak Momeni; Wenying Shou; Helen Kettle; Harry J Flint; Andreas F Haas; Béatrice Laroche; Jan-Ulrich Kreft; Paul B Rainey; Shiri Freilich; Stefan Schuster; Kim Milferstedt; Jan R van der Meer; Tobias Groβkopf; Jef Huisman; Andrew Free; Cristian Picioreanu; Christopher Quince; Isaac Klapper; Simon Labarthe; Barth F Smets; Harris Wang; Orkun S Soyer
Journal:  ISME J       Date:  2016-03-29       Impact factor: 10.302

8.  Applying fecal microbiota transplantation (FMT) to treat recurrent Clostridium difficile infections (rCDI) in children.

Authors:  Shaaz Fareed; Neha Sarode; Frank J Stewart; Aneeq Malik; Elham Laghaie; Saadia Khizer; Fengxia Yan; Zoe Pratte; Jeffery Lewis; Lilly Cheng Immergluck
Journal:  PeerJ       Date:  2018-05-30       Impact factor: 2.984

  8 in total

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